Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu3401	Atu3402	Atu3403	Atu3404	Atu3405
in planta	Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	+0.1	-0.6	-0.4	-0.4	+0.1
in planta	Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	-0.5	+0.1	-0.2	-0.3	-0.2
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.5	+0.2	-0.3	-0.0	-0.4
phage	AgroPhage_C04	-0.1	-0.3	-0.0	+0.6	-1.1
in planta	Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.2	+0.0	+0.1	-0.8	+0.1
carbon source	D-Saccharic potassium salt (C)	-0.3	-0.5	-0.2	+0.1	+0.1
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.3	-0.2	-0.1	+0.2	-0.4
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.2	-0.2	+0.1	+0.3	-0.5
phage	AgroPhage_C10	+0.3	-0.1	-0.5	-0.5	+0.1
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.4	+0.3	+0.1	-0.1	-0.4
pH	R2A pH 5.5	+0.3	-0.2	-0.1	-0.2	-0.3
no phage	P3L5	-0.1	+0.4	-0.1	-0.2	-0.3
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.4	+0.4	-0.3	+0.3	-0.3
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.5	+0.2	-0.4	+0.0	+0.6
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.2	+0.1	+0.5	+0.3	-0.7
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.3	+0.7	+0.1	-0.4	-0.1
phage	AgroPhage_E10	-0.1	+0.4	+0.2	-0.7	+0.3
lb	LB	-0.2	+0.2	+0.5	+0.1	-0.4
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.4	+0.0	+0.5	+0.3	-0.1
in planta	Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days	+0.4	+0.1	+0.1	+0.3	-0.4
in planta	Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.1	-0.3	+0.5	+0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.3	+0.4	+0.2	+0.1
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.0	+0.5	-0.2	+0.4	-0.2
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.2	+0.3	+0.3	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.6	+0.0	+0.3	-0.1
in planta	Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	-0.1	+0.4	+0.3	+0.2	+0.3
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.0	+0.3	+0.7	-0.1	+0.4
nitrogen source	DL-2-Aminobutyric (N)	-0.1	-0.5	-0.1	+1.0	+1.1
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.1	+0.4	+0.4	+0.2	+0.4
in planta	Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.1	+0.3	+0.4	+0.4	+0.4