Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3358 and Atu3359 overlap by 4 nucleotidesAtu3359 and Atu3360 are separated by 12 nucleotidesAtu3360 and Atu3361 are separated by 4 nucleotidesAtu3361 and Atu3362 are separated by 26 nucleotides Atu3358: Atu3358 - amino acid ABC transporter permease, at 396,414 to 397,046 Atu3358 Atu3359: Atu3359 - amino acid ABC transporter permease, at 397,043 to 397,825 Atu3359 Atu3360: Atu3360 - amino acid ABC transporter ATPase/permease, at 397,838 to 398,653 Atu3360 Atu3361: Atu3361 - hypothetical protein, at 398,658 to 400,004 Atu3361 Atu3362: Atu3362 - monooxygenase, at 400,031 to 401,341 Atu3362
Group Condition Atu3358 Atu3359 Atu3360 Atu3361 Atu3362
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.0 -0.5 -0.4 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.7 -0.2 +0.2 -0.0
carbon source D-Saccharic potassium salt (C) -0.4 +0.0 -0.1 -0.6 -0.1
phage AgroPhage_C04 -0.8 +0.5 -0.6 -0.5 +0.2
nophagecontrol No phage control +0.1 -0.0 -0.5 -0.3 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.2 -0.6 -0.1 -0.3
phage AgroPhage_B01 -0.5 +0.2 +0.1 -0.3 -0.2
phage AgroPhage_C10 -0.1 +0.4 -0.5 -0.3 -0.1
phage AgroPhage_E10 -0.1 -0.7 +0.2 +0.2 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.3 -0.2 +0.3 -0.1
phage AgroPhage_E04 +0.1 -0.1 -0.6 -0.2 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 -0.2 +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.4 -0.6 +0.5 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 -0.5 +0.0 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.2 +0.2 +0.4 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 -0.4 +0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.2 +0.7 +0.3 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.2 +0.2 +0.2 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.5 -0.1 +0.2
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 +0.4 -0.2 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 +0.3 +0.3 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.6 -0.0 +0.3
phage phage 95.1 +0.5 +0.1 +0.6 +0.0 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +1.0 -0.3 +0.1
nitrogen source DL-2-Aminobutyric (N) +0.2 +0.0 +0.3 +0.2 +0.5
nitrogen source L-Histidine (N) +0.1 +0.3 +0.4 +0.4 +0.2
nitrogen source L-Histidine (N) +0.4 +0.2 +0.5 +0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.2 +0.6 +0.1 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.3 +0.2 +0.1 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.2 +0.7 +0.0 +0.2
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