Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3355 and Atu3356 are separated by 160 nucleotidesAtu3356 and Atu3357 are separated by 254 nucleotidesAtu3357 and Atu3358 are separated by 295 nucleotidesAtu3358 and Atu3359 overlap by 4 nucleotides Atu3355: Atu3355 - LysR family transcriptional regulator, at 391,676 to 392,575 Atu3355 Atu3356: Atu3356 - malic enzyme, at 392,736 to 395,024 Atu3356 Atu3357: Atu3357 - amino acid ABC transporter substrate-binding protein, at 395,279 to 396,118 Atu3357 Atu3358: Atu3358 - amino acid ABC transporter permease, at 396,414 to 397,046 Atu3358 Atu3359: Atu3359 - amino acid ABC transporter permease, at 397,043 to 397,825 Atu3359
Group Condition Atu3355 Atu3356 Atu3357 Atu3358 Atu3359
carbon source D-Galacturonic Acid (C) -0.1 -1.7 +0.0 -0.1 +0.1
carbon source D-Galacturonic Acid (C) -0.0 -1.7 -0.0 +0.0 +0.1
carbon source D-Saccharic potassium salt (C) -0.1 -0.9 -0.1 -0.4 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.0 -0.1 -0.5 -0.7
stress R2A with tungstate 375 mM -0.1 -0.0 -0.1 -0.8 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -0.6 -0.0 +0.1 -0.1
carbon source D-Saccharic potassium salt (C) +0.2 -0.6 -0.1 +0.0 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.0 -0.8 +0.0 -0.1 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 -0.2 -0.2 +0.1
stress Chloramphenicol 12.5 ug/mL -0.4 +0.0 -0.4 +0.1 +0.4
phage AgroPhage_E10 +0.4 -0.1 +0.2 -0.1 -0.7
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 -0.0 -0.3 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.1 +0.1 +0.2 -0.1
phage AgroPhage_F10 +0.2 +0.1 +0.1 -0.6 +0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.1 +0.1 -0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.1 +0.3 -0.3
phage AgroPhage_C04 +0.1 +0.2 +0.1 -0.8 +0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 -0.2 -0.4 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.0 +0.2 +0.4 +0.0
nophagecontrol No phage control -0.3 -0.1 -0.1 +0.3 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 -0.1 -0.2 -0.0
Atjh2 +0.2 -0.1 +0.1 +0.5 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 +0.1 +0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.1 +0.3 +0.1 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.0 +0.0 +0.7 -0.2
nitrogen source L-Histidine (N) +0.1 -0.1 +0.3 +0.4 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -0.2 +0.7 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.1 +0.4 +0.2 +0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.1 +0.3 +0.6 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.0 +0.4 +0.6 -0.2
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