Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3354 and Atu3355 are separated by 422 nucleotidesAtu3355 and Atu3356 are separated by 160 nucleotidesAtu3356 and Atu3357 are separated by 254 nucleotidesAtu3357 and Atu3358 are separated by 295 nucleotides Atu3354: Atu3354 - pyrroloquinoline-quinone-dependent quinate dehydrogenase, at 388,845 to 391,253 Atu3354 Atu3355: Atu3355 - LysR family transcriptional regulator, at 391,676 to 392,575 Atu3355 Atu3356: Atu3356 - malic enzyme, at 392,736 to 395,024 Atu3356 Atu3357: Atu3357 - amino acid ABC transporter substrate-binding protein, at 395,279 to 396,118 Atu3357 Atu3358: Atu3358 - amino acid ABC transporter permease, at 396,414 to 397,046 Atu3358
Group Condition Atu3354 Atu3355 Atu3356 Atu3357 Atu3358
carbon source D-Galacturonic Acid (C) -0.1 -0.1 -1.7 +0.0 -0.1
carbon source D-Galacturonic Acid (C) +0.0 -0.0 -1.7 -0.0 +0.0
carbon source D-Saccharic potassium salt (C) +0.0 -0.1 -0.9 -0.1 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.1 -0.2 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.0 -0.0 -0.8 +0.0 -0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.3 -0.6 -0.0 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 +0.1 -0.0 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.0 -0.1 -0.7 +0.2 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.2 -0.2 -0.3 -0.1
phage AgroPhage_C04 -0.0 +0.1 +0.2 +0.1 -0.8
phage AgroPhage_H10 -0.3 +0.3 -0.0 -0.1 -0.4
nitrogen source DL-2-Aminobutyric (N) -0.1 -0.2 -0.2 -0.3 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.2 +0.0 -0.1 -0.2
phage AgroPhage_F10 -0.3 +0.2 +0.1 +0.1 -0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.2 -0.1 -0.4
nophagecontrol No phage control -0.3 -0.3 -0.1 -0.1 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.4 -0.2 +0.1 -0.2
phage AgroPhage_D10 -0.4 +0.4 -0.1 -0.3 +0.0
lb_sorghum x50 665 LB_Sorghum X50 665 -0.2 +0.3 +0.1 -0.2 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.1 +0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.2 +0.0 -0.3 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +0.1 -0.2 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 +0.4 -0.1 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 -0.0 +0.2 +0.4
phage AgroPhage_H04 -0.2 +0.4 +0.1 -0.2 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.2 +0.2 +0.1 +0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.0 -0.1 +0.3 +0.6
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.3 +0.0 +0.1 +0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.4 -0.2 +0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.7 +0.0 +0.3 +0.6
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