Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3327 and Atu8030 are separated by 421 nucleotidesAtu8030 and Atu3328 are separated by 15 nucleotidesAtu3328 and Atu3329 are separated by 146 nucleotidesAtu3329 and Atu3330 are separated by 144 nucleotides Atu3327: Atu3327 - succinoglycan exopolysaccharide synthesis protein, at 361,096 to 361,776 Atu3327 Atu8030: Atu8030 - hypothetical protein, at 362,198 to 362,380 Atu8030 Atu3328: Atu3328 - aldehyde dehydrogenase, at 362,396 to 362,944 Atu3328 Atu3329: Atu3329 - beta alanine--pyruvate transaminase, at 363,091 to 364,425 Atu3329 Atu3330: Atu3330 - methyl-accepting chemotaxis protein, at 364,570 to 366,387 Atu3330
Group Condition Atu3327 Atu8030 Atu3328 Atu3329 Atu3330
nitrogen source Beta-alanine (N) -0.3 N.D. -4.2 -3.7 +0.1
nitrogen source Beta-alanine (N) +0.0 N.D. -3.6 -3.2 +0.1
carbon source Beta-alanine (C) +0.2 N.D. -3.3 -3.3 +0.0
nitrogen source 3-aminobutyric (N) +0.0 N.D. -2.7 -3.2 -0.0
nitrogen source 3-aminobutyric (N) +0.2 N.D. -2.9 -3.0 +0.2
carbon source Beta-alanine (C) +0.3 N.D. -2.3 -2.6 -0.1
carbon source 4-Aminobutyric (C) -0.2 N.D. -0.9 -0.9 -0.0
carbon source 4-Aminobutyric (C) +0.2 N.D. -0.9 -1.3 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 N.D. -0.0 -0.5 -0.2
phage AgroPhage_B07 -1.2 N.D. -0.5 -0.0 -0.1
stress R2A with tungstate 375 mM -0.9 N.D. -0.3 -0.1 +0.1
phage AgroPhage_C04 -1.1 N.D. -0.3 +0.3 -0.1
phage AgroPhage_E10 -0.3 N.D. -0.9 +0.5 -0.2
phage AgroPhage_D04 -0.8 N.D. -0.3 +0.2 +0.2
nitrogen source NAG (N) -1.0 N.D. +0.0 +0.1 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 N.D. -0.6 +0.1 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.9 N.D. -0.3 +0.1 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 N.D. -0.2 -0.1 +0.3
pH R2A pH 5.5 +0.9 N.D. +0.3 +0.1 -0.3
stress R2A with m-arsenite 0.8 mM +1.2 N.D. -0.2 -0.0 +0.1
pH R2A pH 5.5 +0.8 N.D. +0.3 +0.2 -0.2
carbon source p-Coumaric (C) -0.3 N.D. +0.4 +1.3 -0.2
nitrogen source DL-2-Aminobutyric (N) -0.3 N.D. +0.8 +0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 N.D. +0.0 +0.5 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. -0.2 +0.5 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.5 N.D. +0.5 -0.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.2 N.D. -0.1 +0.2 +0.3
stress Timentin 6.25 ug/mL +1.1 N.D. +0.2 +0.3 +0.2
stress Timentin 6.25 ug/mL +1.1 N.D. +0.3 +0.2 +0.3
carbon source p-Coumaric (C) +0.4 N.D. +0.4 +1.4 -0.1
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