Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3316 and Atu3317 are separated by 394 nucleotidesAtu3317 and Atu3318 are separated by 59 nucleotidesAtu3318 and Atu3319 are separated by 270 nucleotidesAtu3319 and Atu3320 are separated by 385 nucleotides Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540 Atu3316 Atu3317: Atu3317 - hypothetical protein, at 348,935 to 349,285 Atu3317 Atu3318: Atu3318 - LuxR family transcriptional regulator, at 349,345 to 350,115 Atu3318 Atu3319: Atu3319 - hypothetical protein, at 350,386 to 350,631 Atu3319 Atu3320: Atu3320 - fibrinogen binding protein, at 351,017 to 351,982 Atu3320
Group Condition Atu3316 Atu3317 Atu3318 Atu3319 Atu3320
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 -0.2 -0.9 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.2 -1.0 -0.0 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.7 -0.4 -0.5 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 -0.1 +0.1 -0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.5 -0.1 -0.5 -0.2
phage AgroPhage_E04 -0.0 -1.4 +0.2 -0.2 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.2 -0.2 -0.7 -0.2
phage AgroPhage_C10 -0.5 -0.5 +0.5 -0.4 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.3 -0.4 +0.4 -0.3
phage AgroPhage_C04 +0.2 -0.8 +0.6 -0.7 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.6 +0.2 +0.2 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +1.0 -0.6 -0.7 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.5 -0.0 +0.0 -0.5
nitrogen source DL-2-Aminobutyric (N) +0.1 +1.2 -0.4 -0.6 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.6 -0.2 -0.1 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.7 -0.2 -0.4 -0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.5 +0.1 -0.5 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 -0.0 -0.6 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.8 -0.1 -0.2 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.4 -0.4 +0.3
phage AgroPhage_F10 -0.3 -0.1 +0.8 +0.3 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.4 +0.3 -0.3 +0.5
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +0.0 +0.7 -0.1
phage Phage 100.1 + bacteria +0.2 +0.8 -0.2 -0.1 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 -0.3 +0.8 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.5 -0.2 +0.5 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +1.4 +0.2 -0.5 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.8 +0.2 +0.5 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 +0.4 +0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.3 +0.3 +0.1 +0.7
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