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Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3294 and Atu3295 are separated by 179 nucleotides
Atu3295 and Atu3296 are separated by 88 nucleotides
Atu3296 and Atu3297 are separated by 1 nucleotides
Atu3297 and Atu3298 are separated by 695 nucleotides
Atu3294: Atu3294 - GntR family transcriptional regulator, at 320,197 to 320,907
Atu3294
Atu3295: Atu3295 - hypothetical protein, at 321,087 to 321,599
Atu3295
Atu3296: Atu3296 - two component response regulator for C4-dicarboxylate transport, at 321,688 to 323,052
Atu3296
Atu3297: Atu3297 - two component sensor kinase for C4-dicarboxylate transport, at 323,054 to 324,436
Atu3297
Atu3298: Atu3298 - C4-dicarboxylate transporter DctA, at 325,132 to 326,478
Atu3298
Group
Condition
Atu3294
Atu3295
Atu3296
Atu3297
Atu3298
nitrogen source
Urea (N)
-0.1
-0.4
-2.4
-2.1
-2.3
nitrogen source
L-Cysteine (N)
-0.1
-0.3
-2.3
-2.2
-2.4
nitrogen source
Ammonium chloride (N)
-0.1
-0.3
-2.3
-2.1
-2.0
nitrogen source
nitrate (N)
-0.2
-0.0
-2.4
-2.1
-2.0
nitrogen source
L-Cysteine (N)
-0.2
+0.2
-2.2
-2.1
-2.2
nitrogen source
Urea (N)
-0.0
-0.1
-2.1
-1.8
-2.1
nitrogen source
3-aminobutyric (N)
-0.1
-0.1
-1.9
-2.1
-1.9
nitrogen source
nitrate (N)
-0.0
+0.1
-2.1
-1.9
-2.1
nitrogen source
L-Arginine (N)
-0.1
-0.0
-2.1
-1.8
-2.0
nitrogen source
Orotic (N)
-1.5
-0.7
-1.3
-1.3
-1.3
nitrogen source
Ammonium chloride (N)
-0.1
+0.0
-2.0
-1.9
-2.0
nitrogen source
3-aminobutyric (N)
-0.4
+0.3
-1.9
-1.8
-1.9
carbon source
D,L-Malic Acid (C)
-0.1
-0.3
-1.6
-1.4
-1.8
nitrogen source
Orotic (N)
-1.4
-0.2
-1.1
-1.4
-1.1
nitrogen source
L-Arginine (N)
-0.1
-0.1
-1.6
-1.6
-1.8
carbon source
succinate (C)
-0.2
-0.7
-1.4
-1.2
-1.6
nitrogen source
L-Alanine (N)
-0.2
-0.3
-1.3
-1.5
-1.6
carbon source
D,L-Malic Acid (C)
-0.1
+0.3
-1.7
-1.7
-1.7
nitrogen source
L-Alanine (N)
-0.1
-0.2
-1.4
-1.3
-1.4
carbon source
succinate (C)
-0.1
+0.1
-1.4
-1.6
-1.6
nitrogen source
D-Alanine (N)
-0.4
+0.3
-1.5
-1.3
-1.4
nitrogen source
Choline chloride (N)
-0.3
+0.0
-1.3
-1.3
-1.4
nitrogen source
Beta-alanine (N)
-0.2
-0.2
-1.3
-1.2
-1.3
nitrogen source
L-Serine (N)
-0.2
+0.1
-1.2
-1.2
-1.5
nitrogen source
D-Alanine (N)
-0.1
+0.1
-1.4
-1.2
-1.4
nitrogen source
L-Histidine (N)
+0.0
+0.1
-1.4
-1.2
-1.5
nitrogen source
L-Histidine (N)
-0.3
+0.3
-1.4
-1.3
-1.4
nitrogen source
Choline chloride (N)
-0.1
+0.3
-1.4
-1.2
-1.4
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
+0.1
+1.9
+1.6
+1.9
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
+0.0
+2.3
+1.8
+2.3
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