Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3291 and Atu3292 are separated by 127 nucleotidesAtu3292 and Atu3293 are separated by 7 nucleotidesAtu3293 and Atu3294 are separated by 49 nucleotidesAtu3294 and Atu3295 are separated by 179 nucleotides Atu3291: Atu3291 - Lpr family transcriptional regulator, at 317,131 to 317,589 Atu3291 Atu3292: Atu3292 - alanine racemase, at 317,717 to 318,883 Atu3292 Atu3293: Atu3293 - D-amino acid dehydrogenase small subunit, at 318,891 to 320,147 Atu3293 Atu3294: Atu3294 - GntR family transcriptional regulator, at 320,197 to 320,907 Atu3294 Atu3295: Atu3295 - hypothetical protein, at 321,087 to 321,599 Atu3295
Group Condition Atu3291 Atu3292 Atu3293 Atu3294 Atu3295
carbon source L-Alanine (C) -4.5 -4.3 -4.4 +0.1 -0.7
carbon source L-Alanine (C) -4.6 -4.3 -4.3 -0.1 -0.3
nitrogen source L-Alanine (N) -4.1 -3.8 -4.5 -0.1 -0.2
nitrogen source L-Alanine (N) -3.6 -3.8 -4.0 -0.2 -0.3
nitrogen source Beta-alanine (N) -4.6 -3.1 -3.6 -0.2 -0.2
nitrogen source D-Alanine (N) -3.8 -3.1 -4.4 -0.4 +0.3
carbon source Beta-alanine (C) -4.1 -3.0 -3.7 -0.0 -0.2
nitrogen source D-Alanine (N) -3.4 -3.0 -4.6 -0.1 +0.1
nitrogen source Beta-alanine (N) -3.5 -2.8 -4.1 -0.3 +0.1
nitrogen source 4-Aminobutyric (N) -3.9 -2.3 -3.3 -0.3 +0.1
nitrogen source 4-Aminobutyric (N) -2.6 -2.1 -4.2 -0.3 -0.0
nitrogen source 3-aminobutyric (N) -2.6 -2.2 -3.4 -0.4 +0.3
nitrogen source 3-aminobutyric (N) -2.7 -2.2 -3.0 -0.1 -0.1
carbon source Beta-alanine (C) -2.1 -2.8 -3.0 -0.2 +0.4
carbon source 4-Aminobutyric (C) -1.8 -1.8 -3.4 -0.2 -0.1
carbon source 4-Aminobutyric (C) -1.8 -1.9 -3.2 +0.0 -0.1
phage AgroPhage_C04 -4.6 -0.2 +0.0 -0.2 -0.1
nitrogen source 5-Aminovaleric (N) -0.8 -0.9 -2.7 -0.2 -0.3
nitrogen source 5-Aminovaleric (N) -0.6 -0.8 -2.5 -0.2 +0.1
nitrogen source D-Lysine (N) -1.6 -0.8 -1.0 -0.3 -0.0
nitrogen source 6-aminocaproic (N) -0.7 -0.5 -1.9 -0.1 -0.3
nitrogen source D-Lysine (N) -0.9 -1.1 -1.2 -0.1 -0.1
nitrogen source 6-aminocaproic (N) -0.5 -0.6 -2.2 -0.0 -0.1
nitrogen source L-Leucine (N) -0.7 -0.6 -1.2 -0.1 -0.5
nitrogen source L-Ornithine (N) -1.2 -0.8 -1.0 -0.1 +0.0
nitrogen source Orotic (N) -0.3 -0.0 -0.5 -1.5 -0.7
nitrogen source L-Leucine (N) -0.8 -0.7 -1.4 -0.1 +0.1
stress R2A with m-arsenite 0.8 mM -1.1 -0.8 -0.9 -0.1 +0.1
nitrogen source DL-2-Aminobutyric (N) -1.2 -0.7 -0.4 -0.2 +1.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.2 -0.9 +0.5 +0.7
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