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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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500 nt
Atu3289 and Atu3290 overlap by 4 nucleotides
Atu3290 and Atu3291 are separated by 216 nucleotides
Atu3291 and Atu3292 are separated by 127 nucleotides
Atu3292 and Atu3293 are separated by 7 nucleotides
Atu3289: Atu3289 - thiamine-phosphate pyrophosphorylase, at 315,458 to 316,120
Atu3289
Atu3290: Atu3290 - phosphomethylpyrimidine kinase, at 316,117 to 316,914
Atu3290
Atu3291: Atu3291 - Lpr family transcriptional regulator, at 317,131 to 317,589
Atu3291
Atu3292: Atu3292 - alanine racemase, at 317,717 to 318,883
Atu3292
Atu3293: Atu3293 - D-amino acid dehydrogenase small subunit, at 318,891 to 320,147
Atu3293
Group
Condition
Atu3289
Atu3290
Atu3291
Atu3292
Atu3293
carbon source
L-Alanine (C)
-1.8
-1.7
-4.5
-4.3
-4.4
carbon source
L-Alanine (C)
-1.6
-1.6
-4.6
-4.3
-4.3
nitrogen source
L-Alanine (N)
-1.3
-1.6
-4.1
-3.8
-4.5
nitrogen source
D-Alanine (N)
-1.5
-1.6
-3.8
-3.1
-4.4
nitrogen source
L-Alanine (N)
-0.8
-2.0
-3.6
-3.8
-4.0
nitrogen source
D-Alanine (N)
-1.6
-1.6
-3.4
-3.0
-4.6
nitrogen source
Beta-alanine (N)
-0.6
-1.3
-4.6
-3.1
-3.6
nitrogen source
Beta-alanine (N)
-1.5
-1.2
-3.5
-2.8
-4.1
carbon source
Beta-alanine (C)
-0.6
-0.8
-4.1
-3.0
-3.7
nitrogen source
4-Aminobutyric (N)
-0.7
-0.8
-3.9
-2.3
-3.3
nitrogen source
3-aminobutyric (N)
-1.3
-1.2
-2.6
-2.2
-3.4
nitrogen source
4-Aminobutyric (N)
-0.3
-0.8
-2.6
-2.1
-4.2
nitrogen source
3-aminobutyric (N)
-0.4
-1.0
-2.7
-2.2
-3.0
carbon source
Beta-alanine (C)
-0.4
-0.6
-2.1
-2.8
-3.0
carbon source
4-Aminobutyric (C)
-0.2
-0.5
-1.8
-1.8
-3.4
carbon source
4-Aminobutyric (C)
-0.2
-0.6
-1.8
-1.9
-3.2
carbon source
D-Trehalose (C)
-3.3
-2.7
-0.2
-0.1
+0.2
carbon source
m-Inositol (C)
-3.1
-2.8
+0.0
-0.2
-0.1
carbon source
Sucrose (C)
-2.9
-2.8
-0.0
-0.0
-0.2
carbon source
L-Fucose (C)
-2.7
-3.2
-0.2
+0.0
+0.2
phage
AgroPhage_C04
-0.6
-0.6
-4.6
-0.2
+0.0
carbon source
Sucrose (C)
-3.0
-2.7
+0.1
-0.1
-0.0
carbon source
Cellotetraose (C)
-3.5
-2.2
-0.0
-0.1
+0.1
carbon source
D-Trehalose (C)
-2.8
-2.7
-0.0
-0.3
+0.1
carbon source
D-Maltose (C)
-2.3
-2.7
-0.5
-0.2
-0.0
carbon source
L-Fucose (C)
-2.9
-2.8
+0.1
+0.0
+0.1
carbon source
D-Cellobiose (C)
-2.7
-2.5
+0.3
-0.1
+0.2
carbon source
Protocatechuic Acid (C)
-2.8
-2.3
+0.2
+0.3
+0.1
carbon source
L-Arabinose (C)
-2.6
-2.6
+0.2
+0.3
+0.2
carbon source
L-Arabinose (C)
-2.5
-2.6
+0.6
+0.2
+0.1
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