Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3289 and Atu3290 overlap by 4 nucleotidesAtu3290 and Atu3291 are separated by 216 nucleotidesAtu3291 and Atu3292 are separated by 127 nucleotidesAtu3292 and Atu3293 are separated by 7 nucleotides Atu3289: Atu3289 - thiamine-phosphate pyrophosphorylase, at 315,458 to 316,120 Atu3289 Atu3290: Atu3290 - phosphomethylpyrimidine kinase, at 316,117 to 316,914 Atu3290 Atu3291: Atu3291 - Lpr family transcriptional regulator, at 317,131 to 317,589 Atu3291 Atu3292: Atu3292 - alanine racemase, at 317,717 to 318,883 Atu3292 Atu3293: Atu3293 - D-amino acid dehydrogenase small subunit, at 318,891 to 320,147 Atu3293
Group Condition Atu3289 Atu3290 Atu3291 Atu3292 Atu3293
carbon source L-Alanine (C) -1.8 -1.7 -4.5 -4.3 -4.4
carbon source L-Alanine (C) -1.6 -1.6 -4.6 -4.3 -4.3
nitrogen source L-Alanine (N) -1.3 -1.6 -4.1 -3.8 -4.5
nitrogen source D-Alanine (N) -1.5 -1.6 -3.8 -3.1 -4.4
nitrogen source L-Alanine (N) -0.8 -2.0 -3.6 -3.8 -4.0
nitrogen source D-Alanine (N) -1.6 -1.6 -3.4 -3.0 -4.6
nitrogen source Beta-alanine (N) -0.6 -1.3 -4.6 -3.1 -3.6
nitrogen source Beta-alanine (N) -1.5 -1.2 -3.5 -2.8 -4.1
carbon source Beta-alanine (C) -0.6 -0.8 -4.1 -3.0 -3.7
nitrogen source 4-Aminobutyric (N) -0.7 -0.8 -3.9 -2.3 -3.3
nitrogen source 3-aminobutyric (N) -1.3 -1.2 -2.6 -2.2 -3.4
nitrogen source 4-Aminobutyric (N) -0.3 -0.8 -2.6 -2.1 -4.2
nitrogen source 3-aminobutyric (N) -0.4 -1.0 -2.7 -2.2 -3.0
carbon source Beta-alanine (C) -0.4 -0.6 -2.1 -2.8 -3.0
carbon source 4-Aminobutyric (C) -0.2 -0.5 -1.8 -1.8 -3.4
carbon source 4-Aminobutyric (C) -0.2 -0.6 -1.8 -1.9 -3.2
carbon source D-Trehalose (C) -3.3 -2.7 -0.2 -0.1 +0.2
carbon source m-Inositol (C) -3.1 -2.8 +0.0 -0.2 -0.1
carbon source Sucrose (C) -2.9 -2.8 -0.0 -0.0 -0.2
carbon source L-Fucose (C) -2.7 -3.2 -0.2 +0.0 +0.2
phage AgroPhage_C04 -0.6 -0.6 -4.6 -0.2 +0.0
carbon source Sucrose (C) -3.0 -2.7 +0.1 -0.1 -0.0
carbon source Cellotetraose (C) -3.5 -2.2 -0.0 -0.1 +0.1
carbon source D-Trehalose (C) -2.8 -2.7 -0.0 -0.3 +0.1
carbon source D-Maltose (C) -2.3 -2.7 -0.5 -0.2 -0.0
carbon source L-Fucose (C) -2.9 -2.8 +0.1 +0.0 +0.1
carbon source D-Cellobiose (C) -2.7 -2.5 +0.3 -0.1 +0.2
carbon source Protocatechuic Acid (C) -2.8 -2.3 +0.2 +0.3 +0.1
carbon source L-Arabinose (C) -2.6 -2.6 +0.2 +0.3 +0.2
carbon source L-Arabinose (C) -2.5 -2.6 +0.6 +0.2 +0.1
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