Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3234 and Atu3235 are separated by 21 nucleotidesAtu3235 and Atu3236 are separated by 144 nucleotidesAtu3236 and Atu3237 are separated by 17 nucleotidesAtu3237 and Atu3238 overlap by 8 nucleotides Atu3234: Atu3234 - NAD binding oxidoreductase, at 250,129 to 251,316 Atu3234 Atu3235: Atu3235 - hypothetical protein, at 251,338 to 252,390 Atu3235 Atu3236: Atu3236 - sugar ABC transporter ATPase, at 252,535 to 253,608 Atu3236 Atu3237: Atu3237 - sugar ABC transporter permease, at 253,626 to 254,474 Atu3237 Atu3238: Atu3238 - sugar ABC transporter permease, at 254,467 to 255,399 Atu3238
Group Condition Atu3234 Atu3235 Atu3236 Atu3237 Atu3238
carbon source Xylobiose (C) -0.9 -0.6 -4.9 -6.9 -6.5
carbon source Xylobiose (C) -0.8 -0.7 -4.8 -5.8 -5.8
carbon source Xylobiose (C) -0.4 -0.9 -4.6 -5.5 -5.9
carbon source Xylobiose (C) -0.8 -0.8 -4.1 -6.1 -4.9
carbon source methyl-beta-D-xylopyranoside (C) -2.5 -2.3 -2.0 -2.5 -1.9
carbon source methyl-beta-D-xylopyranoside (C) -2.4 -1.9 -1.6 -1.8 -1.9
carbon source methyl-beta-D-xylopyranoside (C) -2.0 -1.8 -1.5 -1.4 -1.3
carbon source methyl-beta-D-xylopyranoside (C) -1.7 -1.9 -1.3 -1.7 -1.3
carbon source methyl-alpha-D-xylopyranoside (C) -2.1 -2.0 -0.7 -1.0 -0.7
carbon source methyl-alpha-D-xylopyranoside (C) -2.4 -2.1 -0.4 -1.0 -0.5
nitrogen source DL-2-Aminobutyric (N) -0.9 -0.1 -0.5 -0.2 -0.1
phage AgroPhage_C10 -0.5 -0.2 -0.2 -0.0 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.0 -0.4 -0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.4 +0.0 -0.2 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 -0.3 -0.5 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.1 -0.6 -0.5 -0.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 -0.6 +0.4 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.4 -0.5 -0.6 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -0.3 -0.2 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.3 -0.2 +0.1 +0.3
stress Chloramphenicol 12.5 ug/mL -0.4 +0.2 +0.2 +0.0 -0.6
no phage P4L4 +0.2 +0.5 -0.3 -0.7 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.5 +0.2 -0.5 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.0 -0.2 -0.4 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.1 -0.3 -0.5 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 -0.4 +0.3 +0.3
phage AgroPhage_C04 -0.0 +0.8 -0.5 +0.4 -0.1
carbon source D-Saccharic potassium salt (C) +0.1 +0.4 +0.3 -0.4 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +1.1 +0.1 -0.4 +0.1
phage AgroPhage_E04 +0.4 +0.4 +0.2 +0.2 +0.2
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