Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3226 and Atu3227 are separated by 217 nucleotidesAtu3227 and Atu3228 are separated by 7 nucleotidesAtu3228 and Atu3229 overlap by 4 nucleotidesAtu3229 and Atu3230 are separated by 13 nucleotides Atu3226: Atu3226 - GntR family transcriptional regulator, at 240,435 to 241,169 Atu3226 Atu3227: Atu3227 - AraC family transcriptional regulator, at 241,387 to 242,325 Atu3227 Atu3228: Atu3228 - DNA polymerase III subunit alpha, at 242,333 to 245,608 Atu3228 Atu3229: Atu3229 - hypothetical protein, at 245,605 to 247,023 Atu3229 Atu3230: Atu3230 - hypothetical protein, at 247,037 to 247,801 Atu3230
Group Condition Atu3226 Atu3227 Atu3228 Atu3229 Atu3230
carbon source L-ascorbate (C) -3.3 -0.3 +0.1 +0.1 -0.0
phage AgroPhage_C04 -1.0 -0.2 -0.1 -0.4 -0.4
carbon source L-ascorbate (C) -2.3 -0.1 +0.0 +0.1 +0.3
carbon source NAG (C) -1.1 -0.0 -0.1 -0.0 -0.5
carbon source D-Saccharic potassium salt (C) -1.7 -0.1 -0.1 +0.1 +0.1
carbon source D-Saccharic potassium salt (C) -1.5 +0.1 -0.1 -0.1 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.4 -0.2 +0.0 -0.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 +0.0 -0.2 -0.9
carbon source Methyl alpha-D-glucopyranoside (C) -0.8 -0.5 -0.0 +0.1 -0.0
carbon source NAG (C) -1.1 -0.0 -0.1 +0.1 -0.1
carbon source Methyl alpha-D-glucopyranoside (C) -0.9 -0.1 +0.1 -0.0 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 -0.1 +0.1 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.1 +0.3 -0.6 +0.2
carbon source Methyl alpha-D-glucopyranoside (C) -0.6 -0.6 -0.0 +0.1 +0.1
carbon source D-Leucrose (C) -0.8 -0.2 -0.0 -0.0 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.3 -0.2 -0.2 +0.2
pH R2A pH 5.5 +0.3 -0.7 -0.1 +0.0 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +0.3 -0.1 -0.2 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 -0.1 +0.1 +0.3
nitrogen source DL-2-Aminobutyric (N) -0.4 -0.5 +0.2 +0.2 +0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.3 +0.0 +0.1 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 +0.1 -0.1 -0.6
phage AgroPhage_C10 +0.5 +0.5 -0.1 +0.1 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.2 -0.2 +0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.1 -0.2 -0.1 +1.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.4 +0.1 +0.3 +0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.9 +0.4 +0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.7 +0.4 +0.1 +0.1 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 +0.1 +0.1 +1.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.6 +0.2 +0.3 +0.2
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