Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3222 and Atu3223 are separated by 69 nucleotidesAtu3223 and Atu3224 overlap by 4 nucleotidesAtu3224 and Atu3225 overlap by 4 nucleotidesAtu3225 and Atu3226 are separated by 17 nucleotides Atu3222: Atu3222 - ribose ABC transporter substrate-binding protein, at 235,845 to 236,804 Atu3222 Atu3223: Atu3223 - ribose ABC transporter ATPase, at 236,874 to 238,397 Atu3223 Atu3224: Atu3224 - ribose ABC transporter permease, at 238,394 to 239,440 Atu3224 Atu3225: Atu3225 - ABC transporter permease, at 239,437 to 240,417 Atu3225 Atu3226: Atu3226 - GntR family transcriptional regulator, at 240,435 to 241,169 Atu3226
Group Condition Atu3222 Atu3223 Atu3224 Atu3225 Atu3226
carbon source L-ascorbate (C) -0.5 -0.4 -0.2 -0.2 -3.3
carbon source L-ascorbate (C) -0.1 -0.3 -0.3 -0.3 -2.3
carbon source D-Saccharic potassium salt (C) +0.1 -0.2 +0.0 -0.4 -1.5
carbon source D-Saccharic potassium salt (C) +0.0 +0.0 +0.2 -0.1 -1.7
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.6 -0.1 -0.0 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.0 -0.5 -0.1 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.2 -0.2 -0.0 -0.6
carbon source NAG (C) -0.0 -0.2 -0.0 +0.0 -1.1
carbon source L-Alanine (C) -0.2 -0.1 +0.1 +0.1 -1.0
phage AgroPhage_C04 -0.1 +0.1 -0.1 +0.2 -1.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.2 -0.2 -0.6
carbon source NAG (C) +0.2 -0.1 +0.1 +0.2 -1.1
carbon source D-Leucrose (C) +0.3 +0.1 -0.1 -0.1 -0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.3 +0.1 -0.1 -0.6
nitrogen source DL-2-Aminobutyric (N) +0.6 -0.5 -0.1 -0.2 -0.4
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.2 +0.2 +0.1 -0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.1 -0.2 -0.6
phage AgroPhage_E10 -0.4 +0.4 -0.4 +0.2 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 -0.2 +0.3 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.7 +0.7 +0.2 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.4 +0.2 -0.2 +0.4
carbon source L-Fucose (C) +0.4 +0.2 +0.2 +0.2 -0.3
phage AgroPhage_C10 -0.7 +0.4 +0.6 +0.1 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.3 +0.2 -0.2 +0.5 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.1 +0.1 -0.1 +0.5 +0.7
phage AgroPhage_H04 -0.3 +0.2 +0.2 +0.4 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.4 +0.3 +0.6 -0.4
carbon source D-Galacturonic Acid (C) +0.7 +0.4 +0.4 +0.3 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.1 +0.2 +0.5 +0.4
carbon source D-Galacturonic Acid (C) +0.6 +0.5 +0.4 +0.4 -0.1
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