Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3183 and Atu3184 overlap by 4 nucleotidesAtu3184 and Atu3185 are separated by 417 nucleotidesAtu3185 and Atu3186 are separated by 70 nucleotidesAtu3186 and Atu3187 are separated by 9 nucleotides Atu3183: Atu3183 - hypothetical protein, at 192,860 to 193,129 Atu3183 Atu3184: Atu3184 - hypothetical protein, at 193,126 to 194,169 Atu3184 Atu3185: Atu3185 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 194,587 to 195,906 Atu3185 Atu3186: Atu3186 - glycerol-3-phosphate ABC transporter permease, at 195,977 to 196,858 Atu3186 Atu3187: Atu3187 - glycerol-3-phosphate ABC transporter permease, at 196,868 to 197,716 Atu3187
Group Condition Atu3183 Atu3184 Atu3185 Atu3186 Atu3187
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -4.4 -0.3 +0.0 +0.0 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -4.2 +0.4 -0.2 -0.0 -0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.9 +0.3 -0.3 -0.1 -0.1
phage AgroPhage_C10 -3.4 -0.1 +0.0 -0.7 +0.2
phage AgroPhage_E04 -3.5 +0.0 +0.2 -0.4 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.6 -0.4 +0.2 -0.6 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.9 -0.2 +0.2 -0.0 -0.4
stress R2A with Vancomycin 0.009 mM -3.2 +0.1 +0.1 -0.2 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.6 -0.2 -0.0 -0.2 -0.1
carbon source D-Saccharic potassium salt (C) -2.5 -0.0 -0.1 +0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.7 +0.1 -0.0 +0.1 -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.9 -0.0 +0.0 -0.1 -0.6
r2a_control R2A control -2.1 -0.1 -0.2 +0.2 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.3 -0.1 +0.1 -0.1 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.7 +0.1 -0.2 -0.3 -0.2
carbon source D-(+)-melezitose (C) -2.3 -0.1 +0.2 -0.1 +0.2
carbon source D-Sorbitol (C) -2.0 +0.1 -0.2 +0.1 -0.2
carbon source Xylobiose (C) -2.0 -0.2 -0.1 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.9 -0.1 +0.2 -0.1 -0.1
no phage P4L5 -2.5 +0.2 +0.2 +0.0 +0.2
nophagecontrol No phage control -2.2 +0.3 +0.0 -0.0 -0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.1 -0.6 +0.2 +0.2 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.7 +0.3 -0.3 +0.1 +0.4
phage Phage 95.3 + bacteria +2.1 -0.2 -0.2 -0.1 -0.3
phage Phage 97.3 + bacteria +2.1 -0.0 -0.2 -0.2 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +2.2 +0.2 -0.2 -0.0 -0.6
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +2.0 +0.0 -0.4 -0.2 +0.4
phage phage 95.1 +2.0 -0.3 -0.0 +0.3 -0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.8 +0.4 -0.1 -0.2 +0.2
no phage P1L4 +1.7 +0.1 +0.1 +0.2 +0.4
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