Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3172 and Atu3173 are separated by 3 nucleotidesAtu3173 and Atu3174 are separated by 210 nucleotidesAtu3174 and Atu3175 are separated by 38 nucleotidesAtu3175 and Atu3176 overlap by 4 nucleotides Atu3172: Atu3172 - sugar ABC transporter permease, at 182,036 to 182,866 Atu3172 Atu3173: Atu3173 - sugar ABC transporter permease, at 182,870 to 183,754 Atu3173 Atu3174: Atu3174 - sugar ABC transporter substrate-binding protein, at 183,965 to 185,224 Atu3174 Atu3175: Atu3175 - hypothetical protein, at 185,263 to 186,435 Atu3175 Atu3176: Atu3176 - GntR family transcriptional regulator, at 186,432 to 187,148 Atu3176
Group Condition Atu3172 Atu3173 Atu3174 Atu3175 Atu3176
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -0.4 -0.3 -1.1
phage AgroPhage_E04 -0.1 -1.0 -0.1 -0.9 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 -0.1 -0.4 -0.7
phage AgroPhage_D10 -0.7 +0.3 -0.3 -0.4 -0.1
phage AgroPhage_C10 -0.6 -0.2 +0.3 -0.2 -0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 -0.3 +0.0 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 +0.2 -0.4 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 +0.0 -0.4 +0.5
phage AgroPhage_E10 -0.2 +0.3 -0.1 +0.3 -0.3
nitrogen source DL-2-Aminobutyric (N) +0.7 +0.1 -0.3 -0.3 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -0.6 -0.1 -0.2 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.1 +0.8 -0.5
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 -0.0 +0.8 +0.0
phage AgroPhage_H04 -0.3 +0.5 -0.0 +0.3 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 +0.1 +0.0 +0.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.3 -0.0 -0.1 +0.4
no phage P2L5 +0.3 +0.2 +0.1 -0.6 +0.4
phage AgroPhage_F10 +0.2 -0.3 -0.2 +0.5 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.6 -0.4 +0.5 -0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -0.4 +0.3 -0.4 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.5 -0.0 +0.4 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.1 +1.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.3 +0.1 +0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 -0.4 +0.0 -0.1 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.4 +0.1 +0.1 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.7 +0.1 +0.5 -0.3
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 -0.1 +0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.5 -0.3 +0.7 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.2 +0.3 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.9 +0.1 +0.9 +0.7
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