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Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3168 and Atu3169 are separated by 12 nucleotides
Atu3169 and Atu3170 are separated by 12 nucleotides
Atu3170 and Atu3171 are separated by 10 nucleotides
Atu3171 and Atu3172 are separated by 4 nucleotides
Atu3168: Atu3168 - sorbitol/mannitol ABC transporter permease, at 178,224 to 179,096
Atu3168
Atu3169: Atu3169 - sorbitol/mannitol ABC transporter permease, at 179,109 to 179,933
Atu3169
Atu3170: Atu3170 - sorbitol/mannitol ABC transporter ATPase, at 179,946 to 180,944
Atu3170
Atu3171: Atu3171 - sugar ABC transporter ATPase, at 180,955 to 182,031
Atu3171
Atu3172: Atu3172 - sugar ABC transporter permease, at 182,036 to 182,866
Atu3172
Group
Condition
Atu3168
Atu3169
Atu3170
Atu3171
Atu3172
phage
AgroPhage_C10
-0.5
-1.1
-0.3
+0.1
-0.6
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.4
-0.4
-0.7
-0.6
+0.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.0
-1.3
-0.4
-0.0
+0.0
phage
Phage 95.3 + bacteria
-0.4
-0.8
-0.1
-0.0
-0.2
phage
Phage 97.2 + bacteria
-0.4
-0.6
-0.3
-0.1
-0.2
phage
AgroPhage_D10
-0.5
-0.0
+0.1
-0.3
-0.7
phage
Phage 95.3 + bacteria
-0.2
-1.3
+0.1
+0.0
-0.1
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
-0.7
-0.1
-0.5
-0.1
phage
AgroPhage_D07
-0.1
-0.7
-0.4
+0.2
-0.2
carbon source
D-Sorbitol (C)
+0.2
-0.6
+0.3
-0.3
-0.2
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
-0.5
-0.2
-0.6
+0.4
phage
AgroPhage_F04
+0.2
-0.6
+0.3
-0.2
-0.2
stress
R2A with m-arsenite 0.8 mM
-0.2
+0.6
+0.1
-0.5
-0.2
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.2
-0.7
+0.1
+0.2
+0.3
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.1
-0.6
-0.1
+1.1
-0.0
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.5
-0.6
-0.0
+0.6
+0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.0
+0.8
+0.0
+0.2
-0.4
stress
R2A with Vancomycin 0.009 mM
+0.1
+0.8
-0.2
+0.1
-0.2
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.4
+0.2
-0.0
+0.5
+0.5
in planta
Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
+0.3
+0.5
+0.3
+0.2
-0.3
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.8
-0.2
+0.2
+0.2
+0.1
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
-0.1
+0.2
-0.1
+0.8
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.3
+0.7
+0.4
-0.1
-0.1
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+1.2
+0.0
-0.1
+0.0
+0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.3
-0.4
+0.3
+1.3
-0.2
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.1
+0.7
+0.3
+0.3
-0.1
in planta
Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.5
+0.8
+0.2
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.3
+0.4
+0.3
+0.2
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.3
+0.7
+0.3
+0.2
+0.1
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
+0.8
+0.3
+0.4
+0.0
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