Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3161 and Atu3162 are separated by 151 nucleotidesAtu3162 and Atu3163 are separated by 114 nucleotidesAtu3163 and Atu3164 are separated by 16 nucleotidesAtu3164 and Atu3165 are separated by 259 nucleotides Atu3161: Atu3161 - hypothetical protein, at 169,398 to 170,867 Atu3161 Atu3162: Atu3162 - LacI family transcriptional regulator, at 171,019 to 172,032 Atu3162 Atu3163: Atu3163 - zinc-binding dehydrogenase, at 172,147 to 173,157 Atu3163 Atu3164: Atu3164 - sorbitol dehydrogenase, at 173,174 to 173,944 Atu3164 Atu3165: Atu3165 - sorbitol/mannitol ABC transporter substrate-binding protein, at 174,204 to 175,457 Atu3165
Group Condition Atu3161 Atu3162 Atu3163 Atu3164 Atu3165
carbon source D-Glucosamine Hydrochloride (C) -0.1 -3.9 +0.0 -0.1 +0.0
carbon source D-Glucosamine Hydrochloride (C) +0.1 -3.6 -0.0 -0.1 -0.1
carbon source D-Galacturonic Acid (C) -0.1 -3.2 +0.0 -0.0 -0.0
carbon source D-Galacturonic Acid (C) -0.0 -2.9 +0.1 +0.1 +0.0
carbon source NAG (C) +0.1 -2.6 -0.0 -0.0 -0.0
carbon source L-ascorbate (C) +0.1 -2.4 +0.1 -0.1 +0.0
carbon source NAG (C) +0.0 -2.3 -0.1 +0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -1.3 -0.0 -0.4 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -1.1 -0.4 -0.4 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -1.7 -0.1 -0.3 +0.1
carbon source D-Saccharic potassium salt (C) +0.2 -2.3 +0.1 +0.0 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -1.5 -0.0 -0.4 -0.1
carbon source L-Fucose (C) -0.1 -1.7 +0.1 -0.2 -0.0
carbon source L-Fucose (C) +0.1 -2.0 -0.0 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -1.7 -0.1 -0.0 +0.1
carbon source L-ascorbate (C) +0.1 -1.8 +0.1 -0.0 +0.0
carbon source D-Saccharic potassium salt (C) +0.5 -2.2 -0.0 -0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -1.8 -0.1 -0.1 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -1.2 +0.1 -0.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -1.3 +0.5 -0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.1 +0.0 +1.0 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.6 +0.7 +0.2 +0.3
carbon source Maltitol (C) +0.0 +2.1 -0.1 -0.1 -0.0
carbon source Maltitol (C) -0.0 +2.0 +0.1 +0.1 -0.0
carbon source Xylitol (C) +0.0 +2.6 -0.0 +0.0 -0.3
carbon source Xylitol (C) +0.1 +2.7 +0.1 -0.1 -0.1
carbon source Maltitol (C) -0.0 +3.2 -0.1 +0.1 -0.1
carbon source Maltitol (C) -0.0 +3.4 -0.1 -0.0 -0.1
carbon source D-Sorbitol (C) -0.0 +13.2 -0.1 -0.8 -0.4
carbon source D-Sorbitol (C) -0.0 +13.1 -0.1 -0.6 -0.2
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