Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3145 and Atu3146 are separated by 22 nucleotidesAtu3146 and Atu3147 are separated by 234 nucleotidesAtu3147 and Atu3148 are separated by 35 nucleotidesAtu3148 and Atu3149 are separated by 9 nucleotides Atu3145: Atu3145 - pectin degradation protein, at 152,547 to 152,864 Atu3145 Atu3146: Atu3146 - proline dipeptidase, at 152,887 to 154,119 Atu3146 Atu3147: Atu3147 - oxidoreductase, at 154,354 to 156,357 Atu3147 Atu3148: Atu3148 - sugar ABC transporter ATPase, at 156,393 to 157,478 Atu3148 Atu3149: Atu3149 - sugar ABC transporter permease, at 157,488 to 158,324 Atu3149
Group Condition Atu3145 Atu3146 Atu3147 Atu3148 Atu3149
carbon source Lactulose (C) +0.0 -0.1 -5.2 -4.3 -4.0
carbon source Lactulose (C) +0.2 -0.0 -5.1 -4.2 -4.2
carbon source Beta-Lactose (C) -0.0 +0.1 -4.4 -4.7 -4.1
carbon source Lactitol (C) +0.3 +0.1 -5.2 -3.7 -3.7
carbon source Beta-Lactose (C) -0.0 -0.1 -4.3 -3.7 -3.8
carbon source Lactitol (C) +0.1 +0.1 -4.8 -3.3 -3.6
carbon source Lactulose (C) +0.1 -0.0 -3.8 -2.7 -2.9
carbon source Lactulose (C) -0.1 -0.0 -3.5 -3.0 -2.4
carbon source alpha-Lactose (C) -0.0 -0.0 -3.1 -2.9 -2.8
carbon source alpha-Lactose (C) -0.1 +0.2 -3.0 -2.8 -2.4
carbon source Methyl-B-D-galactopyranoside (C) -0.2 -0.1 -1.7 -1.2 -1.1
carbon source Methyl-B-D-galactopyranoside (C) -0.1 +0.1 -1.6 -1.2 -1.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.6 -0.1 -0.8 -0.3
carbon source D-Galacturonic Acid (C) -0.2 -0.2 -1.5 -0.2 -0.2
carbon source D-Galacturonic Acid (C) -0.3 -0.1 -1.6 -0.2 -0.1
carbon source Rhamnogalacturonan - from potato (C) +0.1 -0.3 -0.6 -0.4 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.1 -1.0 -0.6 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.1 -1.0 -0.5 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.2 -0.8 -0.4 +0.1
carbon source Rhamnogalacturonan - from potato (C) +0.4 -0.1 -0.6 -0.6 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.1 -0.9 -0.3 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 +0.3 -0.6 -0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -0.2 -0.2 +0.2 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.2 -0.6 -0.4 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 +0.4 -0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.1 -0.1 +0.5 +0.6
nitrogen source DL-2-Aminobutyric (N) +0.6 +0.0 -0.1 +0.8 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.3 -0.1 +1.0 +0.3
phage AgroPhage_F04 +0.5 -0.2 -0.3 +0.4 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.7 -0.1 -0.1 +0.6
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