Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3142 and Atu3143 are separated by 138 nucleotidesAtu3143 and Atu3144 are separated by 89 nucleotidesAtu3144 and Atu3145 are separated by 50 nucleotidesAtu3145 and Atu3146 are separated by 22 nucleotides Atu3142: Atu3142 - 5-keto-4-deoxyuronate isomerase, at 149,909 to 150,733 Atu3142 Atu3143: Atu3143 - hypothetical protein, at 150,872 to 151,669 Atu3143 Atu3144: Atu3144 - GntR family transcriptional regulator, at 151,759 to 152,496 Atu3144 Atu3145: Atu3145 - pectin degradation protein, at 152,547 to 152,864 Atu3145 Atu3146: Atu3146 - proline dipeptidase, at 152,887 to 154,119 Atu3146
Group Condition Atu3142 Atu3143 Atu3144 Atu3145 Atu3146
carbon source D-Galacturonic Acid (C) -2.0 -5.5 +2.2 -0.2 -0.2
carbon source D-Galacturonic Acid (C) -1.8 -5.5 +2.4 -0.3 -0.1
carbon source Rhamnogalacturonan - from potato (C) -0.5 -3.2 -0.5 +0.1 -0.3
carbon source Rhamnogalacturonan - from potato (C) -0.2 -3.8 -0.4 +0.4 -0.1
carbon source D-Saccharic potassium salt (C) +0.1 -0.2 -2.2 -0.2 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -1.1 -0.8 -0.6
phage AgroPhage_C10 -0.2 -0.4 -1.5 -0.2 -0.1
carbon source D-Saccharic potassium salt (C) -0.1 +0.0 -1.7 -0.5 -0.1
carbon source NAG (C) +0.1 +0.2 -1.8 -0.3 -0.1
phage AgroPhage_D10 -0.1 -0.1 -0.9 -0.7 +0.1
carbon source NAG (C) -0.1 -0.0 -1.2 -0.3 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.8 +0.1 -0.6
phage AgroPhage_C04 -0.2 -0.2 -1.2 -0.1 +0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.2 -1.3 -0.1 +0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.3 -0.9 -0.4 +0.1
carbon source NAG (C) +0.0 +0.1 -1.5 -0.1 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 -1.0 +0.2 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -1.1 -0.0 -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.4 +0.4 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -1.6 +0.5 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 -1.4 -0.1 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.3 -0.7 -0.4 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 -0.6 -0.5 -0.1
carbon source Xylitol (C) +0.1 +0.0 -1.2 +0.3 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -0.7 +0.3 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.1 -1.1 +0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.0 -1.1 +0.2 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.6 -0.8 +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.2 +0.9 -0.6 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.5 -0.3 +0.4 +0.7
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