Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3138 and Atu3139 overlap by 4 nucleotidesAtu3139 and Atu3140 are separated by 25 nucleotidesAtu3140 and Atu3141 are separated by 113 nucleotidesAtu3141 and Atu3142 overlap by 4 nucleotides Atu3138: Atu3138 - hypothetical protein, at 146,107 to 146,985 Atu3138 Atu3139: Atu3139 - hypothetical protein, at 146,982 to 148,118 Atu3139 Atu3140: Atu3140 - 5-dehydro-4-deoxyglucarate dehydratase, at 148,144 to 149,055 Atu3140 Atu3141: Atu3141 - 2-deoxy-D-gluconate 3-dehydrogenase, at 149,169 to 149,912 Atu3141 Atu3142: Atu3142 - 5-keto-4-deoxyuronate isomerase, at 149,909 to 150,733 Atu3142
Group Condition Atu3138 Atu3139 Atu3140 Atu3141 Atu3142
carbon source D-Galacturonic Acid (C) -5.8 -7.0 -6.2 -1.9 -2.0
carbon source D-Galacturonic Acid (C) -7.2 -5.5 -5.5 -1.8 -1.8
carbon source Rhamnogalacturonan - from potato (C) -2.9 -4.3 -3.5 -0.4 -0.5
carbon source Rhamnogalacturonan - from potato (C) -3.3 -3.0 -3.2 -0.4 -0.2
stress Chloramphenicol 12.5 ug/mL -0.3 -0.2 -0.3 -0.3 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.2 -1.3 +0.1 -0.0
phage AgroPhage_C04 -0.3 -0.4 +0.1 -0.5 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.9 -0.3 -0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 -0.5 -0.4 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.2 -0.5 +0.2 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 -0.1 -0.4 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.1 -0.9 -0.1 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -0.4 -0.6 +0.2
phage AgroPhage_E10 -0.1 +0.2 +0.4 -0.6 -0.2
nitrogen source DL-2-Aminobutyric (N) -0.3 +0.2 +0.3 -0.1 -0.3
phage AgroPhage_C10 -0.2 +0.2 +0.4 -0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 -0.6 -0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.1 -0.2 -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.1 +0.4 +0.4 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.4 +0.1 +0.1 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.1 +0.1 +0.2 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.0 +1.1 -0.1 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.1 +0.9 +0.1 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.0 +1.5 -0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.2 +0.4 +0.2 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.0 +1.2 +0.0 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.1 +0.9 +0.2 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.0 +1.2 -0.0 +0.0
carbon source D-Saccharic potassium salt (C) +0.0 -0.1 +4.0 +0.0 -0.1
carbon source D-Saccharic potassium salt (C) -0.1 +0.2 +4.0 -0.1 +0.1
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