Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1003 experiments or choose conditions or try the comparative fitness browser

500 ntAtu3114 and Atu3115 are separated by 117 nucleotidesAtu3115 and Atu3116 are separated by 266 nucleotidesAtu3116 and Atu3117 are separated by 10 nucleotidesAtu3117 and Atu3118 are separated by 24 nucleotides Atu3114: Atu3114 - sugar ABC transporter substrate-binding protein, at 123,659 to 124,948 Atu3114 Atu3115: Atu3115 - TetR family transcriptional regulator, at 125,066 to 125,764 Atu3115 Atu3116: Atu3116 - oxidoreductase, at 126,031 to 127,152 Atu3116 Atu3117: Atu3117 - hypothetical protein, at 127,163 to 128,326 Atu3117 Atu3118: Atu3118 - hypothetical protein, at 128,351 to 129,172 Atu3118
Group Condition Atu3114 Atu3115 Atu3116 Atu3117 Atu3118
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -1.4 +0.1 -0.4 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.8 -0.6 -0.1 -0.2
phage AgroPhage_H04 -0.2 -1.0 -0.2 -0.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -1.1 -0.2 -0.0 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.9 -0.4 -0.1 -0.2
phage AgroPhage_F10 +0.2 -1.0 -0.3 -0.4 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.9 -0.2 -0.1 -0.2
carbon source NAG (C) +0.0 -1.5 +0.0 -0.2 +0.1
carbon source D-Mannose (C) -0.2 -0.9 -0.3 -0.2 -0.1
phage AgroPhage_C04 +0.2 -0.6 -0.1 -0.8 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.6 -0.2 +0.3 -0.2
lb_benthi_root LB_Benthi_root -0.3 -0.8 -0.2 +0.3 -0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.8 -0.2 +0.2 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.2 -0.4 -0.0 +0.4
carbon source methyl-alpha-D-xylopyranoside (C) +0.2 -1.1 -0.0 -0.1 +0.2
stress Chloramphenicol 12.5 ug/mL -0.2 -0.3 +0.3 -0.9 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 -0.6 +0.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 +0.4 -0.4 +0.8 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.8 +0.3 -0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.4 +0.3 -0.2 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.3 +0.2 +0.3 +0.4
nitrogen source DL-2-Aminobutyric (N) +0.6 -0.1 +0.6 +0.3 -0.3
carbon source Rhamnogalacturonan - from potato (C) +0.0 +1.4 +0.1 -0.2 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 +0.3 +0.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.7 +0.3 -0.1 +0.5
phage AgroPhage_A07 +0.7 +0.5 +0.1 -0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.2 +0.3 +0.3 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.8 +0.0 +0.1 +0.2
carbon source D-Galacturonic Acid (C) +0.0 +2.6 -0.0 -0.1 -0.1
carbon source D-Galacturonic Acid (C) -0.0 +2.4 +0.0 +0.0 +0.0
remove
Atu3114
plot		 remove
Atu3115
plot		 remove
Atu3116		 remove
Atu3117
plot		 remove
Atu3118
plot