Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3112 and Atu3113 overlap by 8 nucleotidesAtu3113 and Atu3114 are separated by 72 nucleotidesAtu3114 and Atu3115 are separated by 117 nucleotidesAtu3115 and Atu3116 are separated by 266 nucleotides Atu3112: Atu3112 - sugar ABC transporter permease, at 121,831 to 122,706 Atu3112 Atu3113: Atu3113 - sugar ABC transporter permease, at 122,699 to 123,586 Atu3113 Atu3114: Atu3114 - sugar ABC transporter substrate-binding protein, at 123,659 to 124,948 Atu3114 Atu3115: Atu3115 - TetR family transcriptional regulator, at 125,066 to 125,764 Atu3115 Atu3116: Atu3116 - oxidoreductase, at 126,031 to 127,152 Atu3116
Group Condition Atu3112 Atu3113 Atu3114 Atu3115 Atu3116
carbon source NAG (C) -0.0 -0.1 +0.0 -1.5 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 +0.1 -0.1 -0.8 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 +0.1 -0.1 -0.9 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.1 -0.0 -1.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.0 -0.2 -1.4 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.1 -0.8 -0.2 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.0 -0.3 -0.9 -0.2
phage AgroPhage_H04 -0.1 +0.1 -0.2 -1.0 -0.2
lb_benthi_root LB_Benthi_root -0.1 +0.2 -0.3 -0.8 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.3 -0.3 -0.2 -0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 -0.3 -0.8 -0.2
phage AgroPhage_F10 +0.1 +0.3 +0.2 -1.0 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.2 -0.8 +0.4 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 -0.1 -1.2 +0.1
phage AgroPhage_D10 -0.3 +0.4 +0.6 -0.2 -0.4
carbon source Rhamnogalacturonan - from potato (C) -0.5 -0.7 +0.0 +1.4 +0.1
carbon source Rhamnogalacturonan - from potato (C) -0.3 -0.5 +0.0 +1.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.4 +0.2 -0.8 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 +0.4 -0.4 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.0 -0.3 +0.1 +0.4
nitrogen source DL-2-Aminobutyric (N) +0.0 -0.3 +0.6 -0.1 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.4 +0.3 -0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.3 +0.4 -0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.0 +0.7 +0.8 +0.0
phage AgroPhage_A07 +0.1 +0.1 +0.7 +0.5 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.5 +0.5 -0.2 +0.3
phage AgroPhage_E10 +0.5 +0.0 +0.9 +0.4 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.3 +0.4 +0.1 +0.6
carbon source D-Galacturonic Acid (C) -0.0 -0.2 -0.0 +2.4 +0.0
carbon source D-Galacturonic Acid (C) -0.1 -0.2 +0.0 +2.6 -0.0
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