Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3105 and Atu3106 are separated by 193 nucleotidesAtu3106 and Atu3107 are separated by 118 nucleotidesAtu3107 and Atu3108 overlap by 8 nucleotidesAtu3108 and Atu3109 overlap by 4 nucleotides Atu3105: Atu3105 - hypothetical protein, at 113,228 to 114,157 Atu3105 Atu3106: Atu3106 - sugar ABC transporter substrate-binding protein, at 114,351 to 115,637 Atu3106 Atu3107: Atu3107 - LacI family transcriptional regulator, at 115,756 to 116,817 Atu3107 Atu3108: Atu3108 - hypothetical protein, at 116,810 to 118,693 Atu3108 Atu3109: Atu3109 - 2-hydroxyacid dehydrogenase, at 118,690 to 119,706 Atu3109
Group Condition Atu3105 Atu3106 Atu3107 Atu3108 Atu3109
carbon source D-Saccharic potassium salt (C) -0.6 -0.1 -0.5 +0.3 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.0 +0.1 +0.1 -0.2
carbon source D-Saccharic potassium salt (C) -1.2 +0.2 -0.4 +0.1 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.8 +0.3 +0.4 -0.3
carbon source NAG (C) -0.6 +0.7 -0.3 -0.2 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.3 -0.2 +0.1 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 +0.2 -0.3 -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.6 -0.5 +0.4 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 +0.2 +0.3 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.7 +0.2 -0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 -0.4 -0.1 +0.0 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 +0.3 -0.3 -0.3 -0.1
pH R2A pH 5.5 +0.2 -0.3 +0.7 +0.1 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.9 +0.2 -0.1 -0.2 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 +0.2 -0.2 +0.2 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.3 +0.1 -0.2 -0.1 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.5 +0.8 -0.1 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.1 +0.1 -0.1 -0.0 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.1 -0.0 -0.2 -0.0 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.4 +0.5 -0.2 +0.3 +0.2
phage Phage 97.2 + bacteria +0.6 +0.3 +0.2 +0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.5 +0.2 +0.2 +0.3 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.1 +0.2 +0.3 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.4 +0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.3 +0.2 +0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.6 +0.0 +0.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.6 +0.1 +0.3 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.5 +0.3 +0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.4 +0.3 +0.5 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 +0.4 +0.8 +0.3 +0.2
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