Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3086 and Atu3087 are separated by 3 nucleotidesAtu3087 and Atu3088 are separated by 237 nucleotidesAtu3088 and Atu3089 are separated by 30 nucleotidesAtu3089 and Atu3090 are separated by 225 nucleotides Atu3086: Atu3086 - spermidine/putrescine ABC transporter permease, at 91,594 to 92,412 Atu3086 Atu3087: Atu3087 - spermidine/putrescine ABC transporter permease, at 92,416 to 93,327 Atu3087 Atu3088: Atu3088 - spermidine/putrescine ABC transporter substrate-binding protein, at 93,565 to 94,854 Atu3088 Atu3089: Atu3089 - spermidine/putrescine ABC transporter ATPase, at 94,885 to 95,970 Atu3089 Atu3090: Atu3090 - DNA polymerase III subunit epsilon, at 96,196 to 97,176 Atu3090
Group Condition Atu3086 Atu3087 Atu3088 Atu3089 Atu3090
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.0 -0.4 -0.4 -0.8
stress R2A with Nickel (II) chloride 0.05 mM +0.2 -0.4 -0.2 -0.4 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.1 -0.2 +0.2 -1.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.3 +0.2 -0.3 -0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.2 +0.2 -0.3 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.0 +0.3 -0.9 -0.8
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 +0.0 -0.4 -0.8
phage AgroPhage_C04 +0.6 -0.2 +0.0 -0.4 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.5 +0.5 -0.5 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.5 +0.3 +0.4
phage AgroPhage_F03 +0.4 +0.3 +0.3 +0.5 +0.2
stress syringaldehyde 1.25 mM +0.3 +0.2 +0.4 +0.4 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.5 +0.6 +0.2
nophagecontrol No phage control +0.3 +0.4 +0.2 +0.4 +0.3
carbon source L-(+)-Erythrulose (C) +0.3 +0.4 +0.4 +0.2 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.2 +0.2 +0.1 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.2 +0.3 +0.4 +0.3
nophagecontrol No phage control +0.6 +0.4 +0.2 +0.3 +0.3
lb_sorghum_leaf LB_sorghum_leaf +0.4 +0.3 +0.4 +0.3 +0.4
nophagecontrol No phage control +0.2 +0.6 +0.3 +0.2 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.4 +0.4 -0.2 +0.5
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.5 +0.4 +0.5 +0.4 +0.2
stress Pyrogallol 0.5 mM +0.5 +0.3 +0.5 +0.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.4 +0.4 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.4 +0.5 +0.6 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.4 +0.6 +0.6 +0.2
lb_sorghum_leaf LB_sorghum_leaf +0.6 +0.4 +0.4 +0.4 +0.3
phage AgroPhage_D07 +0.6 +0.3 +0.2 +0.5 +0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.5 +0.6 +0.2 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.4 +0.2 +0.3 +0.9
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