Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3083 and Atu3084 overlap by 4 nucleotidesAtu3084 and Atu3085 are separated by 151 nucleotidesAtu3085 and Atu3086 are separated by 11 nucleotidesAtu3086 and Atu3087 are separated by 3 nucleotides Atu3083: Atu3083 - hypothetical protein, at 89,708 to 90,148 Atu3083 Atu3084: Atu3084 - RNA polymerase sigma factor, at 90,145 to 90,687 Atu3084 Atu3085: Atu3085 - hydantoin racemase, at 90,839 to 91,582 Atu3085 Atu3086: Atu3086 - spermidine/putrescine ABC transporter permease, at 91,594 to 92,412 Atu3086 Atu3087: Atu3087 - spermidine/putrescine ABC transporter permease, at 92,416 to 93,327 Atu3087
Group Condition Atu3083 Atu3084 Atu3085 Atu3086 Atu3087
stress R2A with G418 disolution 0.02 mM -1.0 -0.2 -0.1 -0.2 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.5 -0.8 +0.0 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.7 -0.5 +0.0 -0.4 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 +0.0 -0.5 -0.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.2 -0.7 +0.2 -0.6 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.1 -0.7 -0.0 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.5 -0.6 +0.4 -0.3 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 -0.2 -0.5 +0.4 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.5 -0.8 +0.5 +0.1 -0.3
carbon source methyl-alpha-D-xylopyranoside (C) -1.0 -0.4 +0.2 +0.3 -0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.3 -0.0 +0.6 +0.5 +0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.2 +0.4 -0.1 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 +0.9 +0.1 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.2 +1.1 +0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +1.1 +0.1 +0.0 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.0 +0.5 +0.7 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.1 +1.0 +0.3 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 +0.9 +0.7 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.0 +0.7 +0.5 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.2 +0.6 +0.3 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.4 +0.5 +0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.3 +0.9 +0.3 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +1.4 +0.2 -0.4 +0.0
lb_arabidopsis_leaf LB_arabidopsis_leaf -0.0 +0.4 +0.7 +0.5 +0.4
phage AgroPhage_B01 +0.3 +0.4 +0.3 +0.5 +0.4
nophagecontrol No phage control +0.5 +0.3 +0.4 +0.2 +0.6
lb_sorghum_leaf LB_sorghum_leaf +0.2 +0.2 +0.6 +0.6 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 +0.6 +0.5 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 +1.1 +0.6 +0.4
nophagecontrol No phage control +0.5 +0.3 +0.8 +0.6 +0.4
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