Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3073 and Atu3074 are separated by 205 nucleotidesAtu3074 and Atu3075 are separated by 87 nucleotidesAtu3075 and Atu3076 are separated by 98 nucleotidesAtu3076 and Atu3077 are separated by 255 nucleotides Atu3073: Atu3073 - aspartate racemase, at 78,886 to 79,578 Atu3073 Atu3074: Atu3074 - short chain dehydrogenase, at 79,784 to 80,557 Atu3074 Atu3075: Atu3075 - TetR family transcriptional regulator, at 80,645 to 81,289 Atu3075 Atu3076: Atu3076 - uracil transport protein, at 81,388 to 82,710 Atu3076 Atu3077: Atu3077 - beta-lactamase, at 82,966 to 84,123 Atu3077
Group Condition Atu3073 Atu3074 Atu3075 Atu3076 Atu3077
stress R2A with Azlocillin 0.2 mM -0.0 +0.1 -0.2 -0.2 -7.5
stress R2A with Azlocillin 0.2 mM -0.1 -0.0 -0.5 -0.4 -6.4
stress R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM -0.3 -0.2 -0.3 -0.4 -2.4
stress R2A with Cephalothin 0.9 mM +0.0 -0.2 -0.3 -0.1 -2.4
stress Chloramphenicol 12.5 ug/mL -1.2 -0.3 -0.6 -0.3 -0.1
carbon source D-Saccharic potassium salt (C) -0.7 -0.3 -1.3 +0.2 -0.2
stress R2A with copper (II) chloride 0.04 mM -0.6 -0.4 -0.6 -0.6 -0.2
stress R2A with Chromium(III) Chloride Hexahydrate 0.02 mM -0.4 -0.7 -0.6 -0.3 -0.2
carbon source L-ascorbate (C) -0.1 -0.1 -2.3 +0.2 +0.1
stress R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM +0.1 -0.0 -0.1 -0.0 -2.1
stress R2A with Cephalothin 0.9 mM +0.1 +0.1 -0.2 -0.1 -2.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.0 -0.6 -0.5 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 -1.2 -0.2 -0.5
carbon source L-ascorbate (C) +0.1 -0.1 -1.7 +0.1 +0.2
stress Erythromycin 12.5 ug/mL -0.4 +0.4 -1.1 +0.3 +0.1
stress Chloramphenicol 12.5 ug/mL -0.1 +0.6 -1.1 -0.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.2 -1.4 +0.1 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 -1.3 +0.3 +0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 +0.2 -0.8 +0.4 -0.7
Atjh14 +0.1 -0.8 -0.4 +0.7 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.8 -1.0 -0.1 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.3 -0.6 +0.5 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 +0.6 -0.9 +0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 -0.5 +0.4 +0.7
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.6 -0.3 +0.6 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.7 -0.2 +0.3 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.9 +0.6 -0.2 +0.4 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 +0.0 -0.0 +0.4 +0.8
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.5 +0.6 +0.2 +0.6 +0.5
nophagecontrol No phage control +0.9 +0.3 +0.4 +0.4 +0.5
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