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Protein
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Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3073 and Atu3074 are separated by 205 nucleotides
Atu3074 and Atu3075 are separated by 87 nucleotides
Atu3075 and Atu3076 are separated by 98 nucleotides
Atu3076 and Atu3077 are separated by 255 nucleotides
Atu3073: Atu3073 - aspartate racemase, at 78,886 to 79,578
Atu3073
Atu3074: Atu3074 - short chain dehydrogenase, at 79,784 to 80,557
Atu3074
Atu3075: Atu3075 - TetR family transcriptional regulator, at 80,645 to 81,289
Atu3075
Atu3076: Atu3076 - uracil transport protein, at 81,388 to 82,710
Atu3076
Atu3077: Atu3077 - beta-lactamase, at 82,966 to 84,123
Atu3077
Group
Condition
Atu3073
Atu3074
Atu3075
Atu3076
Atu3077
stress
R2A with Azlocillin 0.2 mM
-0.0
+0.1
-0.2
-0.2
-7.5
stress
R2A with Azlocillin 0.2 mM
-0.1
-0.0
-0.5
-0.4
-6.4
stress
R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM
-0.3
-0.2
-0.3
-0.4
-2.4
stress
R2A with Cephalothin 0.9 mM
+0.0
-0.2
-0.3
-0.1
-2.4
stress
Chloramphenicol 12.5 ug/mL
-1.2
-0.3
-0.6
-0.3
-0.1
carbon source
D-Saccharic potassium salt (C)
-0.7
-0.3
-1.3
+0.2
-0.2
stress
R2A with copper (II) chloride 0.04 mM
-0.6
-0.4
-0.6
-0.6
-0.2
stress
R2A with Chromium(III) Chloride Hexahydrate 0.02 mM
-0.4
-0.7
-0.6
-0.3
-0.2
carbon source
L-ascorbate (C)
-0.1
-0.1
-2.3
+0.2
+0.1
stress
R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM
+0.1
-0.0
-0.1
-0.0
-2.1
stress
R2A with Cephalothin 0.9 mM
+0.1
+0.1
-0.2
-0.1
-2.0
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.8
-0.0
-0.6
-0.5
+0.2
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.5
-0.4
-1.2
-0.2
-0.5
carbon source
L-ascorbate (C)
+0.1
-0.1
-1.7
+0.1
+0.2
stress
Erythromycin 12.5 ug/mL
-0.4
+0.4
-1.1
+0.3
+0.1
stress
Chloramphenicol 12.5 ug/mL
-0.1
+0.6
-1.1
-0.2
+0.2
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.7
-0.2
-1.4
+0.1
+0.1
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
+0.3
-1.3
+0.3
+0.0
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.9
+0.2
-0.8
+0.4
-0.7
Atjh14
+0.1
-0.8
-0.4
+0.7
+0.7
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.3
+0.8
-1.0
-0.1
+0.5
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.4
+0.3
-0.6
+0.5
+0.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.9
+0.6
-0.9
+0.2
+0.2
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.5
+0.4
-0.5
+0.4
+0.7
in planta
Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
+0.6
-0.3
+0.6
+0.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.1
+0.7
-0.2
+0.3
+0.8
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.9
+0.6
-0.2
+0.4
+0.3
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+1.1
+0.0
-0.0
+0.4
+0.8
lb_arabidopsis_leaf
LB_arabidopsis_leaf
+0.5
+0.6
+0.2
+0.6
+0.5
nophagecontrol
No phage control
+0.9
+0.3
+0.4
+0.4
+0.5
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