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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3041 and Atu3042 are separated by 115 nucleotides
Atu3042 and Atu3043 overlap by 4 nucleotides
Atu3043 and Atu3044 are separated by 44 nucleotides
Atu3044 and Atu3045 are separated by 65 nucleotides
Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954
Atu3041
Atu3042: Atu3042 - hypothetical protein, at 38,070 to 39,146
Atu3042
Atu3043: Atu3043 - hydantoinase beta subunit-like protein, at 39,143 to 40,681
Atu3043
Atu3044: Atu3044 - asparaginase, at 40,726 to 41,670
Atu3044
Atu3045: Atu3045 - hypothetical protein, at 41,736 to 42,083
Atu3045
Group
Condition
Atu3041
Atu3042
Atu3043
Atu3044
Atu3045
phage
phage 95.1
-0.6
-1.0
-0.1
-0.6
-0.7
stress
R2A with Ferric chloride 0.1 mM
-0.5
-0.5
-0.4
-0.8
-0.8
stress
R2A with Gallium(III) chloride 0.02 mM
-0.6
-0.6
-0.5
-0.4
-0.7
r2a_control
R2A control
-0.4
-0.5
-0.3
-0.7
-0.7
stress
R2A with Manganese (II) chloride tetrahydrate 5 mM
-0.5
-0.4
-0.5
-0.6
-0.5
r2a_control
R2A control
-0.3
-0.3
-0.4
-0.7
-0.6
stress
R2A with Cobalt chloride 0.02 mM
-0.5
-0.2
-0.4
-0.6
-0.5
stress
R2A with Chromium(III) Chloride Hexahydrate 0.02 mM
-0.4
-0.6
-0.4
-0.3
-0.6
stress
R2A with Carbenicillin 150 mM
-0.5
-0.7
-0.3
-0.5
-0.2
stress
R2A with Nickel (II) chloride 0.05 mM
-0.6
-0.5
-0.5
-0.5
-0.1
stress
R2A with Calcium Chloride Dihydrate 87.5 mM
-0.6
-0.4
-0.3
-0.5
-0.4
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
+0.8
-0.1
+0.3
+0.7
carbon source
L-Fucose (C)
+0.4
+0.4
+0.5
+0.5
+0.4
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
+0.4
+0.5
+0.3
+0.5
+0.5
carbon source
L-Fucose (C)
+0.4
+0.4
+0.5
+0.5
+0.3
phage
AgroPhage_E10
+0.3
+0.2
+0.3
+0.5
+0.9
carbon source
Betanin (C)
+0.5
+0.5
+0.3
+0.4
+0.6
in planta
Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
+0.7
+0.3
+0.7
+0.6
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.5
+0.4
+0.5
+1.0
-0.0
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.5
+0.7
+0.5
+0.4
+0.3
carbon source
Methyl alpha-D-glucopyranoside (C)
+0.5
+0.6
+0.5
+0.3
+0.6
nophagecontrol
No phage control
+0.5
+0.8
+0.6
-0.2
+0.9
nophagecontrol
No phage control
+0.4
+0.7
+0.5
+0.5
+0.5
carbon source
Sucrose (C)
+0.5
+0.5
+0.6
+0.5
+0.5
phage
AgroPhage_C10
+0.5
+0.6
+0.3
+0.6
+0.6
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.6
+0.2
+0.9
+0.5
+0.5
nophagecontrol
No phage control
+0.6
+0.6
+0.4
+0.6
+0.7
phage
AgroPhage_C04
+0.5
+0.6
+0.5
+0.5
+1.1
carbon source
Betanin (C)
+0.8
+0.8
+0.7
+0.7
+0.3
nophagecontrol
No phage control
+0.6
+0.7
+0.6
+0.6
+0.9
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