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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3037 and Atu3038 are separated by 4 nucleotides
Atu3038 and Atu3039 are separated by 16 nucleotides
Atu3039 and Atu3040 overlap by 8 nucleotides
Atu3040 and Atu3041 are separated by 43 nucleotides
Atu3037: Atu3037 - dipeptide ABC transporter permease, at 31,066 to 31,947
Atu3037
Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598
Atu3038
Atu3039: Atu3039 - hydantoinase beta subunit-like protein, at 33,615 to 35,171
Atu3039
Atu3040: Atu3040 - hypothetical protein, at 35,164 to 36,297
Atu3040
Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954
Atu3041
Group
Condition
Atu3037
Atu3038
Atu3039
Atu3040
Atu3041
No phage control
-0.4
-0.6
-0.7
-0.7
-0.5
stress
R2A with Nickel (II) chloride 0.05 mM
-0.6
-0.5
-0.5
-0.6
-0.6
supernatant
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
-0.6
-0.4
-0.4
-0.6
-0.4
stress
R2A with Manganese (II) chloride tetrahydrate 5 mM
-0.3
-0.4
-0.6
-0.6
-0.5
phage
Phage 97.2 + bacteria
-0.5
-0.5
-0.5
-0.5
-0.5
stress
R2A with silver chloride 5 mM
-0.6
-0.4
-0.5
-0.5
-0.4
stress
R2A with Oxytetracycline 0.0002 mM
-0.6
-0.5
-0.5
-0.4
-0.4
stress
R2A with Ferric chloride 0.1 mM
-0.2
-0.5
-0.5
-0.5
-0.5
stress
R2A with arsenate 50 mM
-0.4
-0.5
-0.5
-0.5
-0.4
stress
R2A with Gallium(III) chloride 0.02 mM
-0.4
-0.3
-0.5
-0.5
-0.6
phage
phage 99.2
-0.5
-0.4
-0.4
-0.6
-0.4
stress
R2A with Sisomicin 0.001 mM
-0.5
-0.3
-0.4
-0.6
-0.5
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
+0.3
+0.5
+0.5
+0.4
+0.4
carbon source
Cellotetraose (C)
+0.5
+0.5
+0.5
+0.2
+0.4
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
+0.4
+0.5
+0.4
+0.5
+0.4
carbon source
Methyl alpha-D-glucopyranoside (C)
+0.6
+0.4
+0.3
+0.3
+0.5
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.2
+0.4
+0.7
+0.4
+0.5
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.3
+0.4
+0.5
+0.5
+0.6
carbon source
D-Maltose (C)
+0.6
+0.4
+0.4
+0.4
+0.4
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.2
+0.6
+0.4
+0.5
+0.5
carbon source
D-Galacturonic Acid (C)
+0.7
+0.4
+0.5
+0.4
+0.5
nophagecontrol
No phage control
+0.6
+0.4
+0.5
+0.5
+0.5
nophagecontrol
No phage control
+0.4
+0.3
+0.4
+0.8
+0.6
lb_arabidopsis_leaf
LB_arabidopsis_leaf
+0.5
+0.5
+0.6
+0.5
+0.6
nophagecontrol
No phage control
+0.6
+0.5
+0.5
+0.8
+0.4
carbon source
Betanin (C)
+0.6
+0.6
+0.6
+0.4
+0.5
carbon source
Sucrose (C)
+0.7
+0.5
+0.5
+0.5
+0.5
phage
AgroPhage_C04
+0.9
+0.4
+0.7
+0.3
+0.5
nophagecontrol
No phage control
+0.6
+0.7
+0.5
+0.8
+0.6
carbon source
Betanin (C)
+1.0
+0.9
+0.8
+0.7
+0.8
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