Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu3037 and Atu3038 are separated by 4 nucleotidesAtu3038 and Atu3039 are separated by 16 nucleotidesAtu3039 and Atu3040 overlap by 8 nucleotidesAtu3040 and Atu3041 are separated by 43 nucleotides Atu3037: Atu3037 - dipeptide ABC transporter permease, at 31,066 to 31,947 Atu3037 Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598 Atu3038 Atu3039: Atu3039 - hydantoinase beta subunit-like protein, at 33,615 to 35,171 Atu3039 Atu3040: Atu3040 - hypothetical protein, at 35,164 to 36,297 Atu3040 Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954 Atu3041
Group Condition Atu3037 Atu3038 Atu3039 Atu3040 Atu3041
No phage control -0.4 -0.6 -0.7 -0.7 -0.5
stress R2A with Nickel (II) chloride 0.05 mM -0.6 -0.5 -0.5 -0.6 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.6 -0.4 -0.4 -0.6 -0.4
stress R2A with Manganese (II) chloride tetrahydrate 5 mM -0.3 -0.4 -0.6 -0.6 -0.5
phage Phage 97.2 + bacteria -0.5 -0.5 -0.5 -0.5 -0.5
stress R2A with silver chloride 5 mM -0.6 -0.4 -0.5 -0.5 -0.4
stress R2A with Oxytetracycline 0.0002 mM -0.6 -0.5 -0.5 -0.4 -0.4
stress R2A with Ferric chloride 0.1 mM -0.2 -0.5 -0.5 -0.5 -0.5
stress R2A with arsenate 50 mM -0.4 -0.5 -0.5 -0.5 -0.4
stress R2A with Gallium(III) chloride 0.02 mM -0.4 -0.3 -0.5 -0.5 -0.6
phage phage 99.2 -0.5 -0.4 -0.4 -0.6 -0.4
stress R2A with Sisomicin 0.001 mM -0.5 -0.3 -0.4 -0.6 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 +0.5 +0.5 +0.4 +0.4
carbon source Cellotetraose (C) +0.5 +0.5 +0.5 +0.2 +0.4
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) +0.4 +0.5 +0.4 +0.5 +0.4
carbon source Methyl alpha-D-glucopyranoside (C) +0.6 +0.4 +0.3 +0.3 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.4 +0.7 +0.4 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.4 +0.5 +0.5 +0.6
carbon source D-Maltose (C) +0.6 +0.4 +0.4 +0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.6 +0.4 +0.5 +0.5
carbon source D-Galacturonic Acid (C) +0.7 +0.4 +0.5 +0.4 +0.5
nophagecontrol No phage control +0.6 +0.4 +0.5 +0.5 +0.5
nophagecontrol No phage control +0.4 +0.3 +0.4 +0.8 +0.6
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.5 +0.5 +0.6 +0.5 +0.6
nophagecontrol No phage control +0.6 +0.5 +0.5 +0.8 +0.4
carbon source Betanin (C) +0.6 +0.6 +0.6 +0.4 +0.5
carbon source Sucrose (C) +0.7 +0.5 +0.5 +0.5 +0.5
phage AgroPhage_C04 +0.9 +0.4 +0.7 +0.3 +0.5
nophagecontrol No phage control +0.6 +0.7 +0.5 +0.8 +0.6
carbon source Betanin (C) +1.0 +0.9 +0.8 +0.7 +0.8
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