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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu3021 and Atu3022 overlap by 4 nucleotides
Atu3022 and Atu3023 are separated by 11 nucleotides
Atu3023 and Atu3024 are separated by 60 nucleotides
Atu3024 and Atu3025 are separated by 71 nucleotides
Atu3021: Atu3021 - sugar ABC transporter ATPase, at 13,412 to 14,527
Atu3021
Atu3022: Atu3022 - sugar ABC transporter permease, at 14,524 to 15,453
Atu3022
Atu3023: Atu3023 - sugar ABC transporter permease, at 15,465 to 16,346
Atu3023
Atu3024: Atu3024 - sugar ABC transporter permease, at 16,407 to 17,936
Atu3024
Atu3025: Atu3025 - oligo alginate lyase, at 18,008 to 20,338
Atu3025
Group
Condition
Atu3021
Atu3022
Atu3023
Atu3024
Atu3025
carbon source
L-Fucose (C)
+1.0
+0.9
+0.9
+0.8
+0.6
carbon source
Cellotetraose (C)
+0.9
+1.0
+0.9
+0.7
+0.7
carbon source
palatinose (C)
+1.0
+0.8
+1.0
+0.9
+0.6
carbon source
L-Sorbose (C)
+0.9
+0.8
+1.0
+0.7
+0.8
carbon source
D-Maltose (C)
+1.1
+0.9
+0.9
+0.8
+0.8
carbon source
Lactulose (C)
+1.1
+0.9
+0.9
+0.7
+0.8
carbon source
D-Cellobiose (C)
+1.0
+0.8
+1.1
+0.8
+0.6
carbon source
D-Leucrose (C)
+1.1
+1.0
+0.8
+0.8
+0.8
carbon source
D-Galacturonic Acid (C)
+1.0
+1.0
+0.9
+0.9
+0.8
carbon source
Methyl alpha-D-glucopyranoside (C)
+1.0
+1.0
+0.8
+0.9
+0.9
carbon source
D-Trehalose (C)
+1.1
+1.0
+1.1
+0.8
+0.7
carbon source
D-(-)-lyxose (C)
+1.0
+1.0
+1.0
+0.7
+0.9
carbon source
Lactulose (C)
+1.1
+0.9
+0.9
+0.9
+0.8
carbon source
Betanin (C)
+1.0
+0.9
+1.1
+0.9
+0.8
nophagecontrol
No phage control
+1.2
+0.9
+1.1
+0.8
+0.8
nophagecontrol
No phage control
+1.2
+1.0
+0.9
+0.8
+0.9
carbon source
Lactitol (C)
+1.1
+1.1
+1.0
+0.9
+0.9
carbon source
Cellotetraose (C)
+1.1
+1.0
+1.0
+0.9
+0.8
phage
AgroPhage_C04
+1.3
+1.0
+1.0
+0.8
+0.8
carbon source
Ribitol (C)
+1.3
+1.1
+0.9
+0.9
+0.9
phage
AgroPhage_C10
+1.1
+1.3
+0.8
+0.9
+1.2
carbon source
Ribitol (C)
+1.1
+1.2
+1.0
+1.0
+0.9
carbon source
m-Inositol (C)
+1.2
+1.2
+1.0
+0.9
+0.9
nophagecontrol
No phage control
+1.4
+1.2
+1.0
+0.9
+0.9
carbon source
Xylitol (C)
+1.2
+1.3
+1.1
+0.9
+0.9
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
+1.3
+1.2
+1.1
+1.1
+0.9
nophagecontrol
No phage control
+1.4
+1.1
+1.2
+1.1
+0.9
carbon source
Sucrose (C)
+1.1
+1.2
+1.2
+1.1
+1.0
carbon source
Lactitol (C)
+1.4
+1.2
+1.3
+0.9
+0.9
carbon source
Betanin (C)
+1.5
+1.3
+1.4
+1.3
+1.2
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