Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2813 and Atu2814 overlap by 4 nucleotidesAtu2814 and Atu2815 are separated by 3 nucleotidesAtu2815 and Atu2816 are separated by 4 nucleotidesAtu2816 and Atu2817 are separated by 93 nucleotides Atu2813: Atu2813 - altronate oxidoreductase, at 2,816,031 to 2,817,164 Atu2813 Atu2814: Atu2814 - zinc-binding dehydrogenase, at 2,817,161 to 2,818,171 Atu2814 Atu2815: Atu2815 - hypothetical protein, at 2,818,175 to 2,818,996 Atu2815 Atu2816: Atu2816 - oxidoreductase, at 2,819,001 to 2,820,014 Atu2816 Atu2817: Atu2817 - ABC transporter, substrate binding protein (ribose), at 2,820,108 to 2,821,049 Atu2817
Group Condition Atu2813 Atu2814 Atu2815 Atu2816 Atu2817
carbon source L-Galactose (C) -3.7 -5.4 -5.8 -5.3 -3.1
carbon source L-Galactose (C) -3.1 -5.9 -4.8 -5.3 -3.0
carbon source L-Fucose (C) -4.0 -4.7 -2.8 -2.0 -0.8
carbon source L-Fucose (C) -4.0 -4.4 -3.0 -2.2 -0.7
carbon source D-Arabinose (C) +0.0 -0.1 -2.4 -2.7 -2.4
carbon source D-Arabinose (C) -0.0 -0.1 -2.0 -3.1 -2.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -1.2 -0.1 -0.5 +0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -1.4 -0.2 -0.5 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.8 -0.7 -0.3 +0.1
nitrogen source L-Ornithine (N) -0.4 -0.2 -0.4 -0.5 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -1.0 -0.0 -0.5 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.4 -0.9 -0.3 -0.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.8 -0.3 -0.4 +0.3
nitrogen source L-Ornithine (N) -0.3 -0.2 -0.5 -0.2 -0.4
nitrogen source Nicotinamide (N) -0.3 -0.4 -0.4 -0.4 -0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.8 -0.2 -0.4 +0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.7 -0.1 -0.4 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.8 -0.6 -0.3 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.7 -0.0 -0.4 +0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -1.0 +0.1 -0.0 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.2 -0.5 +0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.7 +0.2 -0.3 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.4 +0.1 -0.4 +0.3
nitrogen source DL-2-Aminobutyric (N) +0.1 +0.2 -0.6 +0.3 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.3 +0.5 -0.2 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.7 +0.2 +0.3 +0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.6 +0.5 +0.5 -0.0
phage AgroPhage_C04 +0.5 +0.5 -0.2 +0.6 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.2 +1.5 -0.2 +0.4
carbon source L-Xylose (C) +0.7 +1.4 +1.0 +0.5 -0.3
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