Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2734 and Atu2735 are separated by 2 nucleotidesAtu2735 and Atu2736 are separated by 124 nucleotidesAtu2736 and Atu2737 are separated by 9 nucleotidesAtu2737 and Atu2738 overlap by 4 nucleotides Atu2734: Atu2734 - dehydrogenase, at 2,729,525 to 2,730,628 Atu2734 Atu2735: Atu2735 - threonine dehydratase, at 2,730,631 to 2,731,605 Atu2735 Atu2736: Atu2736 - dihydroxy-acid dehydratase, at 2,731,730 to 2,733,514 Atu2736 Atu2737: Atu2737 - oxidoredutase, at 2,733,524 to 2,734,426 Atu2737 Atu2738: Atu2738 - nucleoside-diphosphate-sugar epimerase, at 2,734,423 to 2,735,409 Atu2738
Group Condition Atu2734 Atu2735 Atu2736 Atu2737 Atu2738
carbon source L-ascorbate (C) -0.1 +0.1 -0.2 -4.5 -2.0
carbon source L-ascorbate (C) -0.2 -0.0 -0.4 -4.1 -1.7
carbon source Ribitol (C) +0.1 -0.3 -0.1 -0.9 -0.5
phage AgroPhage_D04 +0.0 -0.2 -0.7 -0.6 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.1 -0.3 -0.2 -0.8
carbon source D-Ribose (C) +0.1 +0.2 +0.1 -0.5 -0.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.7 -0.0 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.8 -0.1 -0.2 -0.5
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.6 +0.3 -0.9 +0.2
stress Chloramphenicol 12.5 ug/mL +0.2 +0.2 -0.0 +0.7 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.6 -0.4 +0.6 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 +0.1 +0.1 +0.8
no phage P2L5 -0.1 -0.3 +0.1 +0.7 +0.5
phage AgroPhage_C04 +0.2 +0.1 +0.1 -0.2 +0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.8 -0.3 +0.6 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 +0.5 +0.5 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.5 +0.1 +0.7
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.2 -0.2 +0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.5 -0.1 +0.2 +0.6
nitrogen source DL-2-Aminobutyric (N) +0.6 -0.3 +0.2 +0.1 +0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 +0.6 +0.7 -0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.2 +0.1 +0.2 +1.0
phage AgroPhage_C10 +0.2 +0.0 +0.2 +0.6 +0.4
Atjh15 +0.3 +0.2 +0.2 -0.1 +0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.2 +1.0 +0.1
Atjh2 +0.3 +0.3 +0.2 +0.4 +0.4
Atjh2 +0.4 +0.4 +0.1 +0.5 +0.3
Atjh2 +0.3 +0.3 +0.2 +0.5 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.6 +0.4 +0.3 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 +0.4 +0.5 +0.3
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