Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu8182 and Atu2675 are separated by 297 nucleotidesAtu2675 and Atu2676 are separated by 51 nucleotidesAtu2676 and Atu2677 are separated by 59 nucleotidesAtu2677 and Atu2678 overlap by 67 nucleotides Atu8182: Atu8182 - hypothetical protein, at 2,658,727 to 2,659,230 Atu8182 Atu2675: Atu2675 - hypothetical protein, at 2,659,528 to 2,659,908 Atu2675 Atu2676: Atu2676 - 4a-hydroxytetrahydrobiopterin dehydratase, at 2,659,960 to 2,660,265 Atu2676 Atu2677: Atu2677 - protein tyrosine phosphatase, at 2,660,325 to 2,660,804 Atu2677 Atu2678: Atu2678 - 2'-5' RNA ligase, at 2,660,738 to 2,661,331 Atu2678
Group Condition Atu8182 Atu2675 Atu2676 Atu2677 Atu2678
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.5 -0.3 -1.7 -0.2
stress R2A with m-arsenite 0.8 mM N.D. -0.5 -0.8 -0.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -1.5 +0.2 +0.7 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 +0.3 -0.9 +0.5
Atjh14 N.D. -0.3 -0.7 +0.8 -0.1
nitrogen source L-Phenylalanine (N) N.D. +0.5 +0.3 -0.5 -0.6
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.8 +0.2 -1.7 +0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 -1.1 +0.8 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.6 -0.6 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.9 +0.4 -0.7 -0.1
Atjh15 N.D. +0.7 -0.6 +0.5 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -1.0 +0.4 +0.5 +0.9
in planta Bethi_Library_OD0.5 N.D. +0.8 -0.4 +0.7 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.7 +0.9 +0.5 +0.5
stress Streptomycin 200 ug/mL N.D. +0.6 +0.5 +0.5 -0.4
phage AgroPhage_E10 N.D. +1.1 +0.3 -0.3 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.3 +0.1 +0.8 +0.7
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.7 +0.5 -0.3
Atjh2 N.D. +0.9 -0.1 +0.6 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 +1.0 +0.5 +0.6
stress Chloramphenicol 12.5 ug/mL N.D. +1.2 +0.5 -0.4 +0.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.7 -0.1 +1.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.8 +0.6 +0.7 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +1.3 -0.7 +1.3 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. +0.2 +0.2 +1.0 +0.6
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +1.0 +0.3 +0.7 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.1 +0.2 +2.2 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +1.0 +0.5 +0.6 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 +0.8 +1.4 +0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +2.3 +0.2 +0.8 +0.0
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