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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu8182 and Atu2675 are separated by 297 nucleotides
Atu2675 and Atu2676 are separated by 51 nucleotides
Atu2676 and Atu2677 are separated by 59 nucleotides
Atu2677 and Atu2678 overlap by 67 nucleotides
Atu8182: Atu8182 - hypothetical protein, at 2,658,727 to 2,659,230
Atu8182
Atu2675: Atu2675 - hypothetical protein, at 2,659,528 to 2,659,908
Atu2675
Atu2676: Atu2676 - 4a-hydroxytetrahydrobiopterin dehydratase, at 2,659,960 to 2,660,265
Atu2676
Atu2677: Atu2677 - protein tyrosine phosphatase, at 2,660,325 to 2,660,804
Atu2677
Atu2678: Atu2678 - 2'-5' RNA ligase, at 2,660,738 to 2,661,331
Atu2678
Group
Condition
Atu8182
Atu2675
Atu2676
Atu2677
Atu2678
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
N.D.
-0.5
-0.3
-1.7
-0.2
stress
R2A with m-arsenite 0.8 mM
N.D.
-0.5
-0.8
-0.3
-0.3
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
-1.5
+0.2
+0.7
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.2
+0.3
-0.9
+0.5
Atjh14
N.D.
-0.3
-0.7
+0.8
-0.1
nitrogen source
L-Phenylalanine (N)
N.D.
+0.5
+0.3
-0.5
-0.6
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
+0.8
+0.2
-1.7
+0.6
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
+0.1
-1.1
+0.8
+0.3
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
-0.1
+0.6
-0.6
+0.5
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
+0.9
+0.4
-0.7
-0.1
Atjh15
N.D.
+0.7
-0.6
+0.5
-0.1
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
-1.0
+0.4
+0.5
+0.9
in planta
Bethi_Library_OD0.5
N.D.
+0.8
-0.4
+0.7
-0.1
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
N.D.
-0.7
+0.9
+0.5
+0.5
stress
Streptomycin 200 ug/mL
N.D.
+0.6
+0.5
+0.5
-0.4
phage
AgroPhage_E10
N.D.
+1.1
+0.3
-0.3
+0.2
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
-0.3
+0.1
+0.8
+0.7
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
+0.4
+0.7
+0.5
-0.3
Atjh2
N.D.
+0.9
-0.1
+0.6
+0.3
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
-0.4
+1.0
+0.5
+0.6
stress
Chloramphenicol 12.5 ug/mL
N.D.
+1.2
+0.5
-0.4
+0.5
in planta
Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
+0.7
-0.1
+1.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.8
+0.6
+0.7
-0.2
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
+1.3
-0.7
+1.3
+0.0
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
N.D.
+0.2
+0.2
+1.0
+0.6
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
+1.0
+0.3
+0.7
+0.2
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
N.D.
+0.1
+0.2
+2.2
+0.0
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
+1.0
+0.5
+0.6
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
N.D.
+0.3
+0.8
+1.4
+0.0
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
N.D.
+2.3
+0.2
+0.8
+0.0
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