Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2663 and Atu2664 are separated by 150 nucleotidesAtu2664 and Atu2665 are separated by 246 nucleotidesAtu2665 and Atu2666 are separated by 23 nucleotidesAtu2666 and Atu2667 are separated by 54 nucleotides Atu2663: Atu2663 - GTP-binding tyrosin phosphorylated protein, at 2,645,242 to 2,647,062 Atu2663 Atu2664: Atu2664 - peptidyl-dipeptidase, at 2,647,213 to 2,649,273 Atu2664 Atu2665: Atu2665 - transcriptional regulator, MarR family, at 2,649,520 to 2,649,978 Atu2665 Atu2666: Atu2666 - MFS permease, at 2,650,002 to 2,651,180 Atu2666 Atu2667: Atu2667 - argininosuccinate synthase, at 2,651,235 to 2,652,458 Atu2667
Group Condition Atu2663 Atu2664 Atu2665 Atu2666 Atu2667
stress Streptomycin 200 ug/mL N.D. -1.3 +0.1 +0.2 N.D.
phage AgroPhage_E04 N.D. +0.2 -0.7 -0.4 N.D.
stress Streptomycin 200 ug/mL N.D. -1.4 +0.3 +0.2 N.D.
carbon source L-ascorbate (C) N.D. +0.1 -1.2 +0.2 N.D.
carbon source L-ascorbate (C) N.D. +0.1 -1.3 +0.4 N.D.
phage AgroPhage_F03 N.D. +0.3 -0.5 -0.6 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 -0.5 +0.2 N.D.
stress Timentin 6.25 ug/mL N.D. -0.5 -0.4 +0.2 N.D.
nophagecontrol No phage control N.D. +0.2 -0.2 -0.5 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 -0.6 -0.2 N.D.
stress R2A with Vancomycin 0.009 mM N.D. +0.2 -0.8 +0.3 N.D.
stress Hygromycin B 25 ug/mL N.D. -0.6 +0.3 +0.0 N.D.
carbon source L-Sorbose (C) N.D. +0.2 -0.5 +0.4 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.5 +0.4 +0.2 N.D.
nitrogen source DL-2-Aminobutyric (N) N.D. +0.2 -0.6 +0.5 N.D.
stress R2A with Vancomycin 0.009 mM N.D. +0.3 -0.4 +0.3 N.D.
phage AgroPhage_C10 N.D. +0.4 +0.3 -0.5 N.D.
phage AgroPhage_D10 N.D. +0.7 -0.3 -0.1 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.3 +0.0 +0.6 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.2 +0.6 -0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +0.8 -0.1 N.D.
stress R2A with m-arsenite 0.8 mM N.D. +0.3 +0.7 -0.3 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 -0.0 +0.5 N.D.
carbon source gluconate (C) N.D. -0.0 +0.9 +0.1 N.D.
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.1 +0.7 +0.3 N.D.
carbon source gluconate (C) N.D. -0.0 +0.9 +0.2 N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.2 +0.8 +0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.5 +0.7 N.D.
stress R2A with hypochlorite 6.25 mM N.D. -0.1 +0.9 +0.4 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.0 +0.9 +0.4 N.D.
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