Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2657 and Atu2658 overlap by 11 nucleotidesAtu2658 and Atu2659 are separated by 12 nucleotidesAtu2659 and Atu2660 are separated by 292 nucleotidesAtu2660 and Atu2661 are separated by 5 nucleotides Atu2657: Atu2657 - hypothetical protein, at 2,640,510 to 2,640,998 Atu2657 Atu2658: Atu2658 - GMP synthase - glutamine amidotransferase protein, at 2,640,988 to 2,641,719 Atu2658 Atu2659: Atu2659 - MFS permease, at 2,641,732 to 2,642,967 Atu2659 Atu2660: Atu2660 - hypothetical protein, at 2,643,260 to 2,643,811 Atu2660 Atu2661: Atu2661 - inorganic pyrophosphatase, at 2,643,817 to 2,644,350 Atu2661
Group Condition Atu2657 Atu2658 Atu2659 Atu2660 Atu2661
phage AgroPhage_C04 -1.7 -0.4 +0.2 -0.7 N.D.
phage AgroPhage_D10 -1.7 +0.1 -0.2 -0.0 N.D.
stress R2A with Gentamicin 0.00125 mM -1.0 -0.0 -0.0 -0.7 N.D.
carbon source Rhamnogalacturonan - from potato (C) -0.8 -0.4 -0.2 -0.2 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.3 -0.1 -0.4 N.D.
stress R2A with m-arsenite 0.8 mM -0.4 -0.2 +0.2 -0.9 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.5 -0.1 +0.4 -0.1 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 -0.8 -0.7 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 +0.0 -0.5 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -0.4 -0.3 +0.5 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 +0.7 +0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +0.4 -0.0 +0.6 N.D.
carbon source Myristic (C) +0.4 +0.1 +0.5 -0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -0.0 +0.4 +1.1 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 -0.1 +0.6 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.1 -0.3 -0.4 +0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.1 -0.4 -0.0 +0.1 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.8 -0.2 -0.3 +0.5 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 -0.3 -0.1 +0.5 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.6 -0.3 -0.1 +0.8 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 +0.2 +0.3 -0.4 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +1.0 -0.2 +0.0 +0.4 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 -0.3 +0.3 +0.3 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +1.2 -0.2 +0.0 +0.4 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 -0.1 +0.8 N.D.
nitrogen source DL-2-Aminobutyric (N) +1.3 +0.7 -0.3 -0.3 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 +0.4 +0.5 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.6 +0.0 +0.4 -0.3 N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 +0.4 +0.3 +0.8 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 +0.1 +2.4 N.D.
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