Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2643 and Atu2644 are separated by 7 nucleotidesAtu2644 and Atu2645 are separated by 12 nucleotidesAtu2645 and Atu2646 are separated by 296 nucleotidesAtu2646 and Atu2647 are separated by 0 nucleotides Atu2643: Atu2643 - succinate dehydrogenase flavoprotein subunit, at 2,628,735 to 2,630,576 Atu2643 Atu2644: Atu2644 - succinate dehydrogenase hydrophobic membrane anchor, at 2,630,584 to 2,630,964 Atu2644 Atu2645: Atu2645 - succinate dehydrogenase cytochrome B-556 subunit, at 2,630,977 to 2,631,369 Atu2645 Atu2646: Atu2646 - hypothetical protein, at 2,631,666 to 2,632,043 Atu2646 Atu2647: Atu2647 - hypothetical protein, at 2,632,044 to 2,632,688 Atu2647
Group Condition Atu2643 Atu2644 Atu2645 Atu2646 Atu2647
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -1.1 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 N.D. N.D. N.D. -0.6 -0.3
carbon source L-ascorbate (C) N.D. N.D. N.D. -0.6 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.6 -0.2
carbon source D-Saccharic potassium salt (C) N.D. N.D. N.D. -0.3 -0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.6 -0.1
carbon source Xylitol (C) N.D. N.D. N.D. -0.5 -0.1
lb_sorghum nk 300 LB_Sorghum NK 300 N.D. N.D. N.D. -0.6 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.5 -0.1
stress R2A with Fusidic 0.002 mM N.D. N.D. N.D. -0.5 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.6 +0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.7 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.6 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.4 +0.1
carbon source D-Saccharic potassium salt (C) N.D. N.D. N.D. +0.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +0.3 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. N.D. -0.4 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. -0.3 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.5 -0.2
nophagecontrol No phage control N.D. N.D. N.D. +0.6 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.6 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. N.D. +0.4 +0.2
nophagecontrol No phage control N.D. N.D. N.D. +0.5 +0.1
phage AgroPhage_D07 N.D. N.D. N.D. +0.6 +0.1
phage AgroPhage_D10 N.D. N.D. N.D. +0.6 +0.1
carbon source D-Sorbitol (C) N.D. N.D. N.D. +1.0 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. N.D. +0.5 +0.3
nophagecontrol No phage control N.D. N.D. N.D. +1.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +1.9 -0.2
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. N.D. +1.0 +0.7
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