Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2626 and Atu2627 are separated by 80 nucleotidesAtu2627 and Atu2628 are separated by 121 nucleotidesAtu2628 and Atu2629 are separated by 80 nucleotidesAtu2629 and Atu2630 overlap by 23 nucleotides Atu2626: Atu2626 - hypothetical protein, at 2,609,462 to 2,609,848 Atu2626 Atu2627: Atu2627 - primosomal protein N', at 2,609,929 to 2,612,145 Atu2627 Atu2628: Atu2628 - site-specific recombinase, at 2,612,267 to 2,613,214 Atu2628 Atu2629: Atu2629 - hypothetical protein, at 2,613,295 to 2,614,392 Atu2629 Atu2630: Atu2630 - hypothetical protein, at 2,614,370 to 2,614,903 Atu2630
Group Condition Atu2626 Atu2627 Atu2628 Atu2629 Atu2630
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.8 N.D. N.D. +0.0 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. N.D. +0.1 -0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 N.D. N.D. -0.0 -0.4
phage AgroPhage_F03 -0.9 N.D. N.D. -0.1 -0.1
phage AgroPhage_C04 -0.4 N.D. N.D. -0.2 -0.4
stress Ferulic Acid 1.25 mM -0.6 N.D. N.D. -0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 N.D. N.D. -0.2 -0.5
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. N.D. +0.1 -0.4
carbon source D-Saccharic potassium salt (C) -0.7 N.D. N.D. +0.2 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.8 N.D. N.D. +0.3 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. N.D. -0.4 -0.7
phage AgroPhage_D07 -0.8 N.D. N.D. +0.1 +0.3
lb_tobacco_leaf LB_Tobacco_Leaf -0.6 N.D. N.D. +0.3 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.7 N.D. N.D. +0.3 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. N.D. -0.2 +0.6
no phage P2L5 -0.4 N.D. N.D. +0.4 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. N.D. +0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 N.D. N.D. +0.5 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. N.D. +0.2 +0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 N.D. N.D. +0.3 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. N.D. +0.2 +0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. N.D. +0.5 +0.6
stress R2A with Ceftazidime 4 mM +0.6 N.D. N.D. -0.2 +0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 N.D. N.D. -0.2 +0.7
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 N.D. N.D. +0.4 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. N.D. +0.2 +0.6
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 N.D. N.D. +0.1 +0.5
nitrogen source DL-2-Aminobutyric (N) +1.0 N.D. N.D. -0.0 +0.9
stress R2A with Vancomycin 0.009 mM +3.5 N.D. N.D. -0.6 +0.1
stress R2A with Vancomycin 0.009 mM +4.3 N.D. N.D. -0.7 +0.5
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