Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2606 and Atu2607 are separated by 24 nucleotidesAtu2607 and Atu2608 overlap by 4 nucleotidesAtu2608 and Atu2609 are separated by 3 nucleotidesAtu2609 and Atu2610 are separated by 6 nucleotides Atu2606: Atu2606 - transcriptional regulator, GntR family, at 2,584,907 to 2,585,659 Atu2606 Atu2607: Atu2607 - glucosamine--fructose-6-phosphate aminotransferase, at 2,585,684 to 2,586,706 Atu2607 Atu2608: Atu2608 - N-acetylglucosamine-6-phosphate deacetylase, at 2,586,703 to 2,587,869 Atu2608 Atu2609: Atu2609 - transcriptional regulator, ROK family, at 2,587,873 to 2,588,799 Atu2609 Atu2610: Atu2610 - FAD-dependent monooxygenase, at 2,588,806 to 2,590,077 Atu2610
Group Condition Atu2606 Atu2607 Atu2608 Atu2609 Atu2610
carbon source NAG (C) -5.8 -5.0 -6.7 -5.8 +0.1
carbon source NAG (C) -3.2 -5.6 -5.8 -7.6 -0.2
carbon source NAG (C) -4.1 -5.5 -5.2 -6.2 +0.1
carbon source D-Glucosamine Hydrochloride (C) -6.9 -5.7 -0.3 -5.3 +0.0
carbon source NAG (C) -3.0 -4.5 -5.0 -5.0 -0.2
nitrogen source NAG (N) -4.2 -3.2 -3.5 -4.9 +0.1
carbon source D-Glucosamine Hydrochloride (C) -5.5 -6.0 -0.1 -4.0 -0.0
nitrogen source NAG (N) -2.8 -3.5 -3.6 -5.4 -0.0
carbon source D-Saccharic potassium salt (C) -2.2 -0.2 -0.7 -0.2 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -1.3 -0.7 -0.8 -0.3 -0.1
carbon source D-Saccharic potassium salt (C) -1.8 -0.2 -0.7 -0.4 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.4 -0.5 -0.8 -0.1 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.8 -0.7 -0.8 +0.1
no phage P2L5 -0.8 -0.1 -0.5 -1.0 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.4 -0.7 -0.1 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -1.4 -0.4 -0.5 +0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.0 -0.2 -0.6 -0.3 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.7 -0.9 -0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.5 -0.2 -0.4 +0.2 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.8 -0.8 -0.1 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 -0.3 -0.9 -0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.3 +0.1 -0.6 +0.2 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.4 -0.8 +0.1 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 +0.1 -0.4 -0.6 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 -0.6 +0.0 -0.2 +0.6
stress R2A with Vancomycin 0.009 mM +1.0 -0.3 -1.7 -0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.5 -0.6 -0.0 +0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.3 +0.0 -0.3 +0.6 +0.6
stress R2A with Vancomycin 0.009 mM +1.1 -0.1 -1.1 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.2 -0.2 +1.6 -0.2
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