Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2604 and Atu2605 are separated by 90 nucleotidesAtu2605 and Atu2606 are separated by 98 nucleotidesAtu2606 and Atu2607 are separated by 24 nucleotidesAtu2607 and Atu2608 overlap by 4 nucleotides Atu2604: Atu2604 - oxidoreductase, at 2,583,285 to 2,584,466 Atu2604 Atu2605: Atu2605 - hypothetical protein, at 2,584,557 to 2,584,808 Atu2605 Atu2606: Atu2606 - transcriptional regulator, GntR family, at 2,584,907 to 2,585,659 Atu2606 Atu2607: Atu2607 - glucosamine--fructose-6-phosphate aminotransferase, at 2,585,684 to 2,586,706 Atu2607 Atu2608: Atu2608 - N-acetylglucosamine-6-phosphate deacetylase, at 2,586,703 to 2,587,869 Atu2608
Group Condition Atu2604 Atu2605 Atu2606 Atu2607 Atu2608
carbon source NAG (C) -6.4 -8.0 -3.2 -5.6 -5.8
carbon source NAG (C) -5.5 -4.7 -5.8 -5.0 -6.7
carbon source NAG (C) -5.4 -4.7 -4.1 -5.5 -5.2
carbon source NAG (C) -5.2 -5.2 -3.0 -4.5 -5.0
nitrogen source NAG (N) -4.4 -5.4 -4.2 -3.2 -3.5
nitrogen source NAG (N) -4.2 -4.3 -2.8 -3.5 -3.6
carbon source D-Glucosamine Hydrochloride (C) +0.0 +0.7 -6.9 -5.7 -0.3
carbon source D-Glucosamine Hydrochloride (C) -0.0 +0.4 -5.5 -6.0 -0.1
carbon source D-Saccharic potassium salt (C) +0.0 +0.1 -2.2 -0.2 -0.7
carbon source D-Saccharic potassium salt (C) -0.1 -0.1 -1.8 -0.2 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 -0.1 -1.3 -0.7 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.3 -1.4 -0.5 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.1 -1.4 -0.4 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 -0.6 -0.7 -0.9
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.7 -0.5 -0.6 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.4 -1.5 -0.2 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 -0.8 -0.4 -0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +1.3 -0.6 -0.8 -0.8
stress R2A with Vancomycin 0.009 mM -0.1 +0.2 +1.0 -0.3 -1.7
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.6 -0.6 -0.5 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +1.1 -0.8 -0.4 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.4 +0.6 -0.7 -0.3 -0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.9 -1.1 +0.1 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.7 -0.8 +0.2 -0.6
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +1.3 -0.6 -0.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +1.2 -1.2 -0.6 +0.0
stress R2A with Vancomycin 0.009 mM +0.0 +0.2 +1.1 -0.1 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +2.2 -0.4 -0.3 -0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +1.3 -0.3 -0.1 +0.3
phage AgroPhage_C04 +0.3 +1.1 +0.6 -0.4 +0.4
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