Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2602 and Atu2603 overlap by 4 nucleotidesAtu2603 and Atu2604 are separated by 13 nucleotidesAtu2604 and Atu2605 are separated by 90 nucleotidesAtu2605 and Atu2606 are separated by 98 nucleotides Atu2602: Atu2602 - ABC transporter, membrane spanning protein (maltose), at 2,581,533 to 2,582,390 Atu2602 Atu2603: Atu2603 - ABC transporter, membrane spanning protein (maltose), at 2,582,387 to 2,583,271 Atu2603 Atu2604: Atu2604 - oxidoreductase, at 2,583,285 to 2,584,466 Atu2604 Atu2605: Atu2605 - hypothetical protein, at 2,584,557 to 2,584,808 Atu2605 Atu2606: Atu2606 - transcriptional regulator, GntR family, at 2,584,907 to 2,585,659 Atu2606
Group Condition Atu2602 Atu2603 Atu2604 Atu2605 Atu2606
carbon source NAG (C) -6.7 -6.9 -6.3 -8.0 -3.2
carbon source NAG (C) -5.4 -4.8 -5.5 -4.7 -5.8
carbon source NAG (C) -5.9 -5.5 -5.4 -4.7 -4.1
carbon source NAG (C) -5.1 -5.9 -5.1 -5.2 -3.0
nitrogen source NAG (N) -3.8 -4.3 -4.4 -5.4 -4.2
nitrogen source NAG (N) -3.8 -3.9 -4.2 -4.3 -2.8
carbon source D-Glucosamine Hydrochloride (C) +0.4 +0.1 +0.0 +0.7 -6.9
carbon source D-Glucosamine Hydrochloride (C) +0.3 +0.3 -0.0 +0.4 -5.5
carbon source D-Saccharic potassium salt (C) +0.1 -0.3 +0.0 +0.1 -2.2
carbon source D-Saccharic potassium salt (C) -0.1 -0.0 -0.1 -0.1 -1.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 -0.4 -0.4 -1.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.3 -0.1 -0.2 -1.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.1 +0.2 +0.4 -1.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.5 +0.1 +0.1 -1.4
phage AgroPhage_C10 +0.1 +0.3 -0.2 -1.1 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.6 +0.2 -0.3 -1.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 -0.3 +0.3 -1.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.7 +0.1 +0.7 -0.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.1 -0.1 +0.9 -1.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.5 -0.1 -0.2 -0.9
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.1 -0.3 +1.3 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.3 +0.2 +1.1 -0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.5 +0.0 +1.3 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.4 +0.2 +0.7 -0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 +0.5 +1.2 -1.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.6 +0.4 +1.3 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.9 +0.3 +0.1 +0.4 -0.5
phage AgroPhage_C04 -0.1 -0.3 +0.3 +1.1 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -0.0 +0.3 +2.2 -0.4
nitrogen source DL-2-Aminobutyric (N) +0.2 +1.9 +0.0 +1.2 +0.0
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