Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2600 and Atu2601 are separated by 188 nucleotidesAtu2601 and Atu2602 are separated by 38 nucleotidesAtu2602 and Atu2603 overlap by 4 nucleotidesAtu2603 and Atu2604 are separated by 13 nucleotides Atu2600: Atu2600 - ABC transporter, nucleotide binding/ATPase protein (maltose/maltodextrin), at 2,578,961 to 2,580,073 Atu2600 Atu2601: Atu2601 - ABC transporter, substrate binding protein (maltose), at 2,580,262 to 2,581,494 Atu2601 Atu2602: Atu2602 - ABC transporter, membrane spanning protein (maltose), at 2,581,533 to 2,582,390 Atu2602 Atu2603: Atu2603 - ABC transporter, membrane spanning protein (maltose), at 2,582,387 to 2,583,271 Atu2603 Atu2604: Atu2604 - oxidoreductase, at 2,583,285 to 2,584,466 Atu2604
Group Condition Atu2600 Atu2601 Atu2602 Atu2603 Atu2604
carbon source NAG (C) -6.3 -7.4 -6.7 -6.9 -6.3
carbon source NAG (C) -5.6 -5.4 -5.1 -5.9 -5.1
carbon source NAG (C) -4.6 -5.6 -5.9 -5.5 -5.4
carbon source NAG (C) -5.1 -5.4 -5.4 -4.8 -5.5
nitrogen source NAG (N) -4.1 -3.9 -3.8 -4.3 -4.4
nitrogen source NAG (N) -4.1 -4.4 -3.8 -3.9 -4.2
Atjh15 -0.3 -0.2 -0.1 -0.7 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.0 -0.3 -0.6 +0.4
phage AgroPhage_C04 -0.3 -0.3 -0.1 -0.3 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 -0.1 -0.9 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.4 -0.0 -0.7 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.3 +0.2 -0.2 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.4 +0.4 +0.1 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.0 +0.2 -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.2 -0.2 +0.9 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.2 +0.4 +0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.1 +0.2 +0.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.5 +0.2 -0.6 +0.3
phage AgroPhage_F04 -0.2 +0.1 +0.7 +0.4 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.1 +0.4 -0.2 +0.1
stress R2A with hypochlorite 6.25 mM +0.5 +0.3 +0.3 +0.1 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 +0.0 +0.4 +0.2
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.7 -0.2 +0.2 +0.5 +0.1
phage AgroPhage_E10 +0.5 +0.4 +0.4 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.5 +0.2 +0.4 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.6 +0.2 +0.1 +0.4
phage AgroPhage_F10 +0.3 +0.2 +0.5 +0.3 +0.3
phage AgroPhage_D04 +0.1 +0.1 +0.7 +0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.9 +0.3 +0.1
nitrogen source DL-2-Aminobutyric (N) +1.7 -0.1 +0.2 +1.9 +0.0
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