Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2598 and Atu8181 are separated by 243 nucleotidesAtu8181 and Atu2600 are separated by 150 nucleotidesAtu2600 and Atu2601 are separated by 188 nucleotidesAtu2601 and Atu2602 are separated by 38 nucleotides Atu2598: Atu2598 - transcriptional regulator, RpiR family, at 2,577,218 to 2,578,081 Atu2598 Atu8181: Atu8181 - hypothetical protein, at 2,578,325 to 2,578,810 Atu8181 Atu2600: Atu2600 - ABC transporter, nucleotide binding/ATPase protein (maltose/maltodextrin), at 2,578,961 to 2,580,073 Atu2600 Atu2601: Atu2601 - ABC transporter, substrate binding protein (maltose), at 2,580,262 to 2,581,494 Atu2601 Atu2602: Atu2602 - ABC transporter, membrane spanning protein (maltose), at 2,581,533 to 2,582,390 Atu2602
Group Condition Atu2598 Atu8181 Atu2600 Atu2601 Atu2602
carbon source NAG (C) +4.0 +1.4 -6.2 -7.4 -6.7
carbon source NAG (C) +3.4 +0.8 -5.1 -5.4 -5.4
carbon source NAG (C) +3.5 +1.1 -4.6 -5.6 -5.9
carbon source NAG (C) +4.2 +1.0 -5.6 -5.4 -5.1
nitrogen source NAG (N) +2.0 +0.7 -4.1 -4.4 -3.8
nitrogen source NAG (N) +1.8 +0.6 -4.1 -3.9 -3.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.7 -0.6 +0.1 +0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -1.7 +0.3 +0.1 -0.4
nitrogen source Carnitine Hydrochloride (N) -0.3 -0.7 +0.1 -0.3 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 +0.2 -0.2 -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.5 -0.5 +0.3 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 +0.6 -0.2 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 +0.6 +0.1 -0.1 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +1.0 -0.1 -0.1 -0.3
stress R2A with Tetracycline 0.002 mM -0.5 +0.3 -0.2 +0.4 -0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.2 -0.3 +0.7 -0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.2 +0.8 -0.0 +0.2
stress R2A with hypochlorite 6.25 mM -0.0 -0.4 +0.5 +0.3 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.4 +0.6 +0.4 +0.1 +0.0
phage AgroPhage_H03 -0.0 +0.8 +0.2 +0.3 -0.3
phage AgroPhage_C10 -0.0 +1.2 +0.0 -0.3 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.9 +0.5 -0.0 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.6 +0.1 +0.2 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +1.2 +0.2 +0.1 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.4 +0.2 +0.1 +0.9
nitrogen source DL-2-Aminobutyric (N) +0.0 -0.5 +1.7 -0.1 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 +0.4 +0.4 -0.0
carbon source D-Glucosamine Hydrochloride (C) +0.9 -0.0 +0.3 +0.3 +0.4
phage AgroPhage_E10 -0.3 +0.8 +0.5 +0.4 +0.4
carbon source D-Glucosamine Hydrochloride (C) +1.2 +0.1 +0.3 +0.4 +0.3
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