Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2557 and Atu2558 are separated by 351 nucleotidesAtu2558 and Atu2559 are separated by 102 nucleotidesAtu2559 and Atu2560 are separated by 130 nucleotidesAtu2560 and Atu2561 are separated by 233 nucleotides Atu2557: Atu2557 - hypothetical protein, at 2,530,420 to 2,530,608 Atu2557 Atu2558: Atu2558 - transcriptional regulator, Lrp family, at 2,530,960 to 2,531,196 Atu2558 Atu2559: Atu2559 - transcriptional regulator, LysR family, at 2,531,299 to 2,532,225 Atu2559 Atu2560: Atu2560 - oxidoreductase, at 2,532,356 to 2,533,639 Atu2560 Atu2561: Atu2561 - ABC transporter, substrate binding protein (molybdate), at 2,533,873 to 2,534,664 Atu2561
Group Condition Atu2557 Atu2558 Atu2559 Atu2560 Atu2561
nitrogen source L-Pipecolic Acid (N) N.D. N.D. -1.6 -2.5 -0.4
nitrogen source L-Pipecolic Acid (N) N.D. N.D. -1.6 -2.5 -0.3
stress R2A with hypochlorite 6.25 mM N.D. N.D. +0.2 -0.0 -1.7
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.2 -0.0 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. -0.5 +0.0 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.7 -0.4 +0.2
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.2 -0.3 -0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.2 -0.1 -0.5
nitrogen source D-Lysine (N) N.D. N.D. -0.1 -0.4 -0.3
stress R2A with hypochlorite 6.25 mM N.D. N.D. -0.1 -0.0 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.6 -0.2 -0.0
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. -0.4 +0.5 -0.8
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.1 +0.2 -1.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.4 -0.2 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.1 +0.3 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.3 -0.2 -0.4
r2a_control R2A control N.D. N.D. +0.3 -0.2 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.4 -0.2 -0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. +0.4 -0.0 -0.4
phage AgroPhage_E04 N.D. N.D. -0.6 +0.0 +0.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. +0.1 +0.3 -0.4
carbon source D-Saccharic potassium salt (C) N.D. N.D. -0.1 -0.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.0 -0.2 +0.7
stress R2A with bromate 5 mM N.D. N.D. -0.2 -0.1 +0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.2 +0.5 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.5 +0.0 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.6 +0.1 +0.4
stress R2A with bromate 5 mM N.D. N.D. +0.0 +0.0 +1.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.2 +0.7 +0.5
stress R2A with Chlorate 400 mM N.D. N.D. -0.0 -0.0 +1.6
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