Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2547 and Atu2548 are separated by 586 nucleotidesAtu2548 and Atu2549 are separated by 3 nucleotidesAtu2549 and Atu2550 are separated by 199 nucleotidesAtu2550 and Atu2551 are separated by 53 nucleotides Atu2547: Atu2547 - 16S ribosomal RNA, at 2,517,145 to 2,518,624 Atu2547 Atu2548: Atu2548 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,519,211 to 2,520,161 Atu2548 Atu2549: Atu2549 - transcriptional regulator, TetR family, at 2,520,165 to 2,520,824 Atu2549 Atu2550: Atu2550 - RND multidrug efflux membrane permease, at 2,521,024 to 2,522,226 Atu2550 Atu2551: Atu2551 - RND multidrug efflux transporter, at 2,522,280 to 2,525,369 Atu2551
Group Condition Atu2547 Atu2548 Atu2549 Atu2550 Atu2551
stress methyl jasmonate 5 mM N.D. +0.4 +0.5 -4.8 -4.9
stress methyl jasmonate 5 mM N.D. +0.4 +0.3 -4.6 -4.8
carbon source Cellotetraose (C) N.D. -5.2 -0.3 +0.0 -0.1
carbon source D-Mannitol (C) N.D. -4.9 -0.3 +0.0 +0.1
carbon source Protocatechuic Acid (C) N.D. -4.9 -0.1 +0.0 +0.1
carbon source D-Mannitol (C) N.D. -4.7 -0.2 -0.0 +0.1
carbon source Betanin (C) N.D. -4.5 -0.2 -0.0 +0.1
carbon source Cellotetraose (C) N.D. -4.3 -0.3 +0.0 -0.0
carbon source succinate (C) N.D. -4.5 -0.3 +0.1 +0.1
carbon source D-Maltose (C) N.D. -4.6 -0.0 +0.1 +0.0
carbon source palatinose (C) N.D. -4.5 -0.1 +0.1 +0.0
carbon source Betanin (C) N.D. -4.1 -0.4 +0.0 +0.0
carbon source Ribitol (C) N.D. -4.4 -0.2 +0.0 +0.0
carbon source Protocatechuic Acid (C) N.D. -4.3 -0.4 +0.3 +0.1
carbon source D-Trehalose (C) N.D. -4.4 +0.0 +0.0 -0.0
carbon source Sucrose (C) N.D. -4.3 -0.1 +0.1 +0.0
carbon source D-Mannose (C) N.D. -4.3 -0.2 +0.1 +0.1
carbon source D-Glucose-6-Phosphate (C) N.D. -4.2 -0.1 +0.1 -0.1
carbon source D-Maltose (C) N.D. -4.3 +0.1 +0.1 +0.0
carbon source D-Mannose (C) N.D. -4.0 -0.3 +0.1 +0.1
carbon source D-Raffinose (C) N.D. -3.9 -0.4 +0.0 +0.1
carbon source Ribitol (C) N.D. -4.3 +0.0 +0.2 -0.1
carbon source D-Fructose (C) N.D. -4.2 +0.1 +0.1 -0.0
carbon source Sucrose (C) N.D. -4.0 -0.1 +0.2 +0.1
carbon source Ethyl benzoate (C) N.D. -2.5 -1.8 +0.9 +0.9
carbon source Ethyl benzoate (C) N.D. -1.8 -1.4 +0.6 +0.5
stress R2A with Bacitracin 0.6 mM N.D. +0.8 +1.2 -1.9 -1.9
stress R2A with Bacitracin 0.6 mM N.D. +0.7 +1.1 -1.8 -1.8
stress R2A with Tetracycline 0.002 mM N.D. +1.3 +3.1 -2.4 -2.6
stress R2A with Tetracycline 0.002 mM N.D. +1.6 +3.2 -2.2 -2.0
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