Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2509 and Atu2510 are separated by 143 nucleotidesAtu2510 and Atu2511 are separated by 19 nucleotidesAtu2511 and Atu2512 are separated by 66 nucleotidesAtu2512 and Atu2513 are separated by 60 nucleotides Atu2509: Atu2509 - sugar kinase, at 2,477,336 to 2,478,295 Atu2509 Atu2510: Atu2510 - aminopeptidase, at 2,478,439 to 2,479,497 Atu2510 Atu2511: Atu2511 - D-alanine aminotransferase, at 2,479,517 to 2,480,383 Atu2511 Atu2512: Atu2512 - transcriptional regulator, LysR family, at 2,480,450 to 2,481,370 Atu2512 Atu2513: Atu2513 - penicillin binding protein, at 2,481,431 to 2,482,942 Atu2513
Group Condition Atu2509 Atu2510 Atu2511 Atu2512 Atu2513
stress R2A with Vancomycin 0.009 mM +0.4 -0.7 -2.7 -0.1 +0.1
stress R2A with Vancomycin 0.009 mM -0.2 -0.4 -1.8 -0.1 -0.2
carbon source D-Saccharic potassium salt (C) -0.5 -0.2 -1.7 -0.0 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.7 -0.5 +0.1
stress R2A with Magnesium sulfate 400 mM +0.1 -0.6 -0.9 +0.1 -0.1
carbon source D-Saccharic potassium salt (C) +0.1 -0.2 -1.3 +0.0 +0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.8 -0.2 -0.3 +0.5
phage AgroPhage_E04 -0.3 -0.4 -0.6 +0.0 -0.2
stress R2A with m-arsenite 0.8 mM -0.1 -0.4 -0.9 +0.1 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.9 -0.2 +0.0 -0.1
carbon source D-glutamine (C) +0.0 -0.2 -0.7 -0.3 +0.1
carbon source Cellopentaose (C) -0.1 -0.4 -0.8 +0.2 -0.2
carbon source NAG (C) -0.0 -0.2 -1.2 +0.2 -0.0
carbon source Ethyl benzoate (C) -0.2 -0.4 -0.7 +0.2 -0.1
carbon source L-ascorbate (C) -0.1 -0.2 -0.8 +0.2 -0.1
carbon source NAG (C) +0.1 -0.3 -1.0 +0.1 +0.0
stress R2A with Gentamicin 0.00125 mM +0.2 -0.5 -0.6 -0.1 +0.0
stress R2A with m-arsenite 0.8 mM -0.0 -0.2 -1.1 +0.1 +0.2
carbon source Cellohexaose (C) +0.0 -0.2 -0.9 +0.2 -0.1
carbon source Cellohexaose (C) +0.3 -0.3 -0.8 +0.1 -0.1
carbon source Cellotetraose (C) +0.1 -0.2 -0.8 +0.1 -0.1
carbon source L-ascorbate (C) +0.1 -0.3 -0.9 +0.2 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.6 -0.3 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 -0.1 -0.5 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.9 +0.4 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 +0.3 -0.4 -0.2
nitrogen source DL-2-Aminobutyric (N) +0.3 +0.6 -0.5 -0.2 +0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 +0.8 -0.3 +0.0
stress R2A with Chloride 800 mM -0.0 +0.2 +1.2 +0.0 -0.1
stress R2A with Chloride 800 mM +0.0 +0.3 +1.2 -0.0 -0.0
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