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Protein
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Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu2507 and Atu2508 are separated by 103 nucleotides
Atu2508 and Atu2509 are separated by 20 nucleotides
Atu2509 and Atu2510 are separated by 143 nucleotides
Atu2510 and Atu2511 are separated by 19 nucleotides
Atu2507: Atu2507 - ABC transporter, membrane spanning protein (sugar), at 2,475,317 to 2,476,153
Atu2507
Atu2508: Atu2508 - ABC transporter, nucleotide binding/ATPase protein (sugar), at 2,476,257 to 2,477,315
Atu2508
Atu2509: Atu2509 - sugar kinase, at 2,477,336 to 2,478,295
Atu2509
Atu2510: Atu2510 - aminopeptidase, at 2,478,439 to 2,479,497
Atu2510
Atu2511: Atu2511 - D-alanine aminotransferase, at 2,479,517 to 2,480,383
Atu2511
Group
Condition
Atu2507
Atu2508
Atu2509
Atu2510
Atu2511
carbon source
D-Saccharic potassium salt (C)
+0.1
-0.2
-0.5
-0.2
-1.7
stress
R2A with Vancomycin 0.009 mM
+0.4
+0.1
+0.4
-0.7
-2.7
stress
R2A with Vancomycin 0.009 mM
+0.1
+0.0
-0.2
-0.4
-1.8
carbon source
D-Saccharic potassium salt (C)
+0.1
-0.4
+0.1
-0.2
-1.3
stress
R2A with m-arsenite 0.8 mM
-0.1
-0.2
-0.0
-0.2
-1.1
stress
R2A with Magnesium sulfate 400 mM
-0.1
+0.1
+0.1
-0.6
-0.9
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.2
+0.3
-0.6
-0.8
-0.2
carbon source
NAG (C)
-0.1
-0.0
-0.0
-0.2
-1.2
carbon source
Ethyl benzoate (C)
-0.2
-0.0
-0.2
-0.4
-0.7
carbon source
NAG (C)
-0.1
-0.1
+0.1
-0.3
-1.0
carbon source
methyl-alpha-D-xylopyranoside (C)
-0.1
-0.2
-0.1
+0.0
-1.0
stress
R2A with m-arsenite 0.8 mM
+0.0
-0.1
-0.1
-0.4
-0.9
phage
AgroPhage_E04
+0.1
-0.2
-0.3
-0.4
-0.6
carbon source
Cellopentaose (C)
-0.5
+0.0
+0.1
-0.3
-0.6
phage
AgroPhage_H03
-0.4
+0.1
-0.4
-0.3
-0.2
carbon source
Cellopentaose (C)
+0.2
-0.1
-0.1
-0.4
-0.8
stress
R2A with Gentamicin 0.00125 mM
-0.2
-0.0
+0.2
-0.5
-0.6
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.2
+0.0
+0.2
-0.1
-0.9
carbon source
Cellohexaose (C)
+0.1
-0.0
+0.3
-0.3
-0.8
carbon source
L-ascorbate (C)
+0.3
+0.3
-0.1
-0.2
-0.8
phage
AgroPhage_F03
+0.1
+0.3
-0.0
-0.4
-0.6
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.5
-0.0
+0.2
+0.3
-0.5
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.5
+0.2
+0.0
+0.4
-0.4
carbon source
L-ascorbate (C)
+0.5
+0.2
+0.1
-0.3
-0.9
nitrogen source
DL-2-Aminobutyric (N)
-0.2
-0.3
+0.3
+0.6
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.8
-0.2
-0.0
-0.2
+0.3
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
+0.2
-0.1
+0.3
+0.5
stress
R2A with Chloride 800 mM
-0.2
+0.1
-0.0
+0.2
+1.2
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.1
+0.2
+0.4
+0.1
+0.8
stress
R2A with Chloride 800 mM
+0.1
-0.1
+0.0
+0.3
+1.2
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