Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2502 and Atu2503 are separated by 306 nucleotidesAtu2503 and Atu2504 are separated by 20 nucleotidesAtu2504 and Atu2505 are separated by 102 nucleotidesAtu2505 and Atu2506 overlap by 1 nucleotides Atu2502: Atu2502 - heme oxygenase, at 2,470,466 to 2,471,077 Atu2502 Atu2503: Atu2503 - dihydrodipicolinate synthase, at 2,471,384 to 2,472,268 Atu2503 Atu2504: Atu2504 - transcriptional regulator, GntR family, at 2,472,289 to 2,472,945 Atu2504 Atu2505: Atu2505 - ABC transporter, substrate binding protein (sugar), at 2,473,048 to 2,474,379 Atu2505 Atu2506: Atu2506 - ABC transporter, membrane spanning protein (sugar), at 2,474,379 to 2,475,317 Atu2506
Group Condition Atu2502 Atu2503 Atu2504 Atu2505 Atu2506
stress R2A with Vancomycin 0.009 mM -0.3 -0.2 -3.4 -0.0 +0.1
stress R2A with Vancomycin 0.009 mM -0.1 +0.1 -3.5 -0.1 -0.0
stress R2A with Calcium Chloride Dihydrate 87.5 mM -0.2 +0.0 -1.7 +0.0 -0.1
stress R2A with EDTA 0.25 mM -0.2 -0.1 -1.5 -0.0 -0.1
stress R2A with Calcium Chloride Dihydrate 87.5 mM -0.1 -0.1 -1.3 -0.2 +0.0
stress R2A with Rifampicin 0.0007 mM +0.1 +0.1 -1.9 +0.1 -0.1
stress R2A with bromate 5 mM -0.2 +0.1 -1.2 -0.0 -0.1
stress R2A with bromate 5 mM -0.1 +0.1 -1.1 +0.0 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 -0.5 +0.1 +0.2
stress R2A with Phenazine methosulfate 0.05 mM -0.1 -0.3 -0.8 +0.1 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 -0.0 -0.5 -0.2
stress R2A with Rifampicin 0.0007 mM -0.2 +0.1 -1.0 +0.2 -0.0
carbon source D-Quinic (C) -0.1 +0.2 -1.0 +0.0 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.4 +0.3 -0.2 +0.1
carbon source L-Fucose (C) +0.2 +0.0 -1.2 +0.1 +0.1
carbon source L-Fucose (C) +0.2 +0.3 -1.3 +0.2 -0.0
stress R2A with Ceftazidime 4 mM -0.1 +0.0 -0.9 +0.3 -0.1
phage AgroPhage_C04 +0.3 -0.2 -0.7 +0.2 -0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.5 +0.5 -0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -0.0 -0.2 -0.3 -0.1
phage AgroPhage_E10 +0.6 -0.5 +0.2 -0.5 +0.2
pH R2A pH 5.5 -0.5 -0.1 +0.6 +0.0 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.4 -0.3 +0.6 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.6 -0.6 -0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 -0.1 +0.2 +0.1 -0.3
pH R2A pH 5.5 -0.2 -0.1 +0.8 +0.0 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.2 +0.3 +0.3 +0.1
carbon source L-ascorbate (C) -0.2 +0.5 -0.1 +0.4 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.7 +0.1 -0.0
nitrogen source DL-2-Aminobutyric (N) +0.4 +0.2 +0.7 +0.8 -0.0
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