Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2497 and Atu2498 are separated by 16 nucleotidesAtu2498 and Atu2499 are separated by 26 nucleotidesAtu2499 and Atu2500 overlap by 4 nucleotidesAtu2500 and Atu2502 are separated by 402 nucleotides Atu2497: Atu2497 - hydrolase, at 2,467,020 to 2,467,805 Atu2497 Atu2498: Atu2498 - hypothetical protein, at 2,467,822 to 2,468,208 Atu2498 Atu2499: Atu2499 - Isochorismatase, at 2,468,235 to 2,468,975 Atu2499 Atu2500: Atu2500 - monooxygenase (pyrimidine utilization protein A), at 2,468,972 to 2,470,063 Atu2500 Atu2502: Atu2502 - heme oxygenase, at 2,470,466 to 2,471,077 Atu2502
Group Condition Atu2497 Atu2498 Atu2499 Atu2500 Atu2502
nitrogen source Orotic (N) -2.0 -2.2 -2.4 -2.9 -0.1
nitrogen source Orotic (N) -2.1 -1.9 -2.4 -2.4 -0.2
nitrogen source DL-2-Aminobutyric (N) -1.2 -0.1 -0.3 -0.6 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.0 -0.7 -0.3 -0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.3 -0.1 -0.3 -0.4
phage AgroPhage_C10 -0.1 -0.2 -0.9 +0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -1.2 +0.5 +0.0
stress R2A with Tetracycline 0.002 mM -0.2 +0.1 -0.3 +0.2 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.2 +0.1 +0.3 -0.7
No phage control +0.2 -0.2 -0.9 +0.0 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 -0.4 -0.0 -0.7
phage AgroPhage_D10 -0.4 -0.2 -0.7 +0.3 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.3 -0.2 -0.2 +0.3
Atjh15 -0.4 -0.4 +0.2 -0.3 +0.4
stress Chloramphenicol 12.5 ug/mL -0.4 +0.4 -0.2 -0.3 +0.1
phage AgroPhage_E10 +0.0 -0.3 -0.3 -0.4 +0.6
phage AgroPhage_D04 +0.3 -0.4 +0.3 +0.1 -0.3
Atjh10 -0.1 -0.2 -0.2 -0.2 +0.7
carbon source Methyl alpha-D-glucopyranoside (C) -0.4 +0.1 +0.3 +0.3 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 +0.6 -0.1 -0.7
stress Chloramphenicol 12.5 ug/mL -0.0 +0.1 +0.6 -0.5 +0.1
in planta Bethi_Library_OD0.01 -0.6 +0.2 +0.1 +0.2 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -0.2 +0.3 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.5 -0.2 +0.1 +0.3
in planta Bethi_Library_OD0.05 +0.2 +0.2 +0.2 -0.4 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 +0.2 +0.3 +0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.0 +0.3 -0.3 +0.4 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.3 +0.2 +0.5 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.0 +0.2 -0.2 +0.7 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.2 +0.2 -0.1 +0.4
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