Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2495 and Atu2496 are separated by 41 nucleotidesAtu2496 and Atu2497 are separated by 20 nucleotidesAtu2497 and Atu2498 are separated by 16 nucleotidesAtu2498 and Atu2499 are separated by 26 nucleotides Atu2495: Atu2495 - flavoprotein oxidoreductase, at 2,465,843 to 2,466,367 Atu2495 Atu2496: Atu2496 - nitroreducatase, at 2,466,409 to 2,466,999 Atu2496 Atu2497: Atu2497 - hydrolase, at 2,467,020 to 2,467,805 Atu2497 Atu2498: Atu2498 - hypothetical protein, at 2,467,822 to 2,468,208 Atu2498 Atu2499: Atu2499 - Isochorismatase, at 2,468,235 to 2,468,975 Atu2499
Group Condition Atu2495 Atu2496 Atu2497 Atu2498 Atu2499
nitrogen source Orotic (N) -2.2 -2.0 -2.0 -2.2 -2.4
nitrogen source Orotic (N) -1.7 -2.2 -2.1 -1.9 -2.4
carbon source L-Sorbose (C) -3.3 -0.2 -0.4 -0.1 +0.1
carbon source L-Sorbose (C) -3.1 -0.1 -0.2 +0.2 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 +0.2 -0.1 -0.3 -1.2
carbon source Phloretic Acid (C) -1.3 -0.2 -0.1 -0.1 -0.2
No phage control -0.0 -0.8 +0.2 -0.2 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -0.6 +0.1 +0.1 -0.4
carbon source D-Sorbitol (C) -1.0 -0.3 -0.1 +0.1 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 -0.0 -0.2 -0.4 +0.2
carbon source Maltitol (C) -0.8 +0.2 -0.3 -0.3 -0.1
stress Chloramphenicol 12.5 ug/mL -0.9 -0.3 -0.4 +0.4 -0.2
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.4 -1.2 -0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.5 +0.3 -0.3 -0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 +0.0 -0.2 -0.2 +0.3
Atjh15 +0.1 -0.6 -0.4 -0.4 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.0 +0.4 -0.1 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 -0.4 -0.2 +0.4
stress Chloramphenicol 12.5 ug/mL -0.8 -0.7 -0.0 +0.1 +0.6
nitrogen source D-Lysine (N) -0.8 +0.2 +0.2 +0.1 -0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.2 +0.2 +0.2 -0.5
phage AgroPhage_D10 +0.4 +0.4 -0.4 -0.2 -0.7
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 +0.4 +0.1 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.8 -0.3 -0.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.7 -0.2 +0.7 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.7 +0.2 -0.3 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.5 -0.6 +0.3 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 +0.3 +0.1 +0.1 -0.4
stress Erythromycin 12.5 ug/mL +1.5 -0.2 +0.1 -0.2 +0.2
stress Erythromycin 12.5 ug/mL +2.1 +0.2 -0.0 -0.3 +0.0
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