Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2486 and Atu2487 are separated by 211 nucleotidesAtu2487 and Atu2488 are separated by 177 nucleotidesAtu2488 and Atu2489 are separated by 33 nucleotidesAtu2489 and Atu2490 are separated by 214 nucleotides Atu2486: Atu2486 - cardiolipin synthase, at 2,454,549 to 2,456,009 Atu2486 Atu2487: Atu2487 - pyridoxamine kinase, at 2,456,221 to 2,457,096 Atu2487 Atu2488: Atu2488 - carbonate dehydratase, at 2,457,274 to 2,457,915 Atu2488 Atu2489: Atu2489 - hypothetical protein, at 2,457,949 to 2,458,764 Atu2489 Atu2490: Atu2490 - aspartate-semialdehyde dehydrogenase, at 2,458,979 to 2,460,013 Atu2490
Group Condition Atu2486 Atu2487 Atu2488 Atu2489 Atu2490
stress R2A with m-arsenite 0.8 mM -0.0 -0.1 N.D. -2.5 N.D.
stress R2A with Cefoxitin 0.008 mM +0.0 -0.3 N.D. -2.1 N.D.
stress R2A with m-arsenite 0.8 mM +0.2 -0.3 N.D. -2.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.9 N.D. -0.9 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 N.D. -1.1 N.D.
stress R2A with Cefoxitin 0.008 mM -0.0 -0.2 N.D. -1.6 N.D.
stress R2A with Azlocillin 0.2 mM -0.2 -0.3 N.D. -1.3 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.0 N.D. -1.1 N.D.
carbon source L-ascorbate (C) +0.0 -0.1 N.D. -1.4 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 N.D. -1.2 N.D.
stress R2A with hypochlorite 6.25 mM +0.1 +0.0 N.D. -1.6 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 N.D. -0.8 N.D.
carbon source m-Inositol (C) -0.0 -0.9 N.D. -0.3 N.D.
stress R2A with Azlocillin 0.2 mM +0.1 -0.1 N.D. -1.2 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 -1.2 N.D. -0.1 N.D.
stress R2A with Tetracycline 0.002 mM -0.1 +0.5 N.D. -1.6 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.7 N.D. -0.7 N.D.
stress R2A with Ticarcillin 0.01 mM -0.2 -0.3 N.D. +0.8 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.9 N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +0.2 N.D. -0.4 N.D.
phage AgroPhage_F04 -0.4 +0.1 N.D. +0.8 N.D.
stress R2A with Ceftazidime 4 mM -0.2 -0.3 N.D. +1.1 N.D.
stress R2A with Ceftazidime 4 mM -0.1 -0.1 N.D. +1.1 N.D.
nophagecontrol No phage control +0.3 -0.2 N.D. +1.0 N.D.
phage AgroPhage_A07 +0.5 -0.2 N.D. +0.8 N.D.
nophagecontrol No phage control +0.0 +0.1 N.D. +1.2 N.D.
nitrogen source Orotic (N) +0.2 +0.4 N.D. +0.8 N.D.
nophagecontrol No phage control +0.2 +0.3 N.D. +1.0 N.D.
stress R2A with Vancomycin 0.009 mM +0.2 +0.4 N.D. +7.0 N.D.
stress R2A with Vancomycin 0.009 mM +0.4 +0.6 N.D. +8.7 N.D.
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