Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2474 and Atu2475 overlap by 8 nucleotidesAtu2475 and Atu2476 overlap by 4 nucleotidesAtu2476 and Atu2477 are separated by 122 nucleotidesAtu2477 and Atu2478 are separated by 69 nucleotides Atu2474: Atu2474 - ABC transporter, membrane spanning protein, at 2,442,536 to 2,443,564 Atu2474 Atu2475: Atu2475 - ABC transporter, membrane spanning protein, at 2,443,557 to 2,444,525 Atu2475 Atu2476: Atu2476 - ABC transporter, nucleotide binding/ATPase protein, at 2,444,522 to 2,445,280 Atu2476 Atu2477: Atu2477 - DNA oxidation protective protein, not DNA-binding, at 2,445,403 to 2,445,891 Atu2477 Atu2478: Atu2478 - hypothetical protein, at 2,445,961 to 2,446,209 Atu2478
Group Condition Atu2474 Atu2475 Atu2476 Atu2477 Atu2478
stress Pyrogallol 0.5 mM -1.5 -1.6 -1.4 -0.1 +0.1
stress Pyrogallol 0.5 mM -1.6 -1.3 -1.3 +0.1 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.7 -0.6 +0.4 -0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.1 -0.2 +0.6 -1.8
phage AgroPhage_B07 -0.3 -0.2 +0.2 +0.1 -1.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.2 -0.1 +0.2 +0.3 -1.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.4 +0.0 -0.2 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.6 +0.3 +0.2 +0.2 -0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 -0.3 -0.1 -0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 +0.1 +0.1 +0.4 -0.9
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.5 +0.2 -0.7 +0.4
Atjh10 +0.5 -0.7 +0.1 -0.2 -0.2
Atjh14 +0.7 -0.1 +0.2 -0.6 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.6 -0.1 -0.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.6 +0.5 -0.0 +0.6
phage AgroPhage_A01 +0.2 +0.4 +0.1 +0.4 -0.7
Atjh10 +0.4 -0.4 +0.1 -0.5 +0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.3 +0.8 -0.0
carbon source D-Saccharic potassium salt (C) +0.1 +0.4 -0.1 -0.8 +0.9
phage AgroPhage_E10 +0.0 +0.7 -0.1 +0.5 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 +0.4 +0.5 -0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.4 +0.5 +0.3 +0.4
No phage control +0.4 -0.5 +0.2 +0.3 +0.5
nophagecontrol No phage control +0.1 -0.1 +0.3 +1.0 -0.3
Atjh10 +0.5 -0.4 +0.1 +0.2 +0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +0.6 -0.4 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 +0.3 +0.9 -0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.2 +0.4 +1.8
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.4 +0.4 +1.6 +0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.8 +0.3 -0.2 +0.9
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