Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu2415 and Atu2416 are separated by 489 nucleotidesAtu2416 and Atu2417 are separated by 162 nucleotidesAtu2417 and Atu2418 are separated by 43 nucleotidesAtu2418 and Atu2419 overlap by 4 nucleotides Atu2415: Atu2415 - glutamine synthetase translation inhibitor, at 2,385,797 to 2,385,994 Atu2415 Atu2416: Atu2416 - glutamine synthetase, at 2,386,484 to 2,387,518 Atu2416 Atu2417: Atu2417 - putative gluconate 5-dehydrogenase, at 2,387,681 to 2,388,451 Atu2417 Atu2418: Atu2418 - two component sensor kinase, at 2,388,495 to 2,391,890 Atu2418 Atu2419: Atu2419 - transcriptional regulator, LuxR family, at 2,391,887 to 2,392,816 Atu2419
Group Condition Atu2415 Atu2416 Atu2417 Atu2418 Atu2419
nitrogen source L-Threonine (N) N.D. -1.5 -0.1 +0.1 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 -0.9 -0.1 -0.1
nitrogen source Glycine (N) N.D. -1.2 +0.0 +0.0 +0.1
stress Chloramphenicol 12.5 ug/mL N.D. -0.2 -0.4 -0.2 -0.3
nitrogen source L-Arginine (N) N.D. -0.5 -0.1 -0.2 -0.1
nitrogen source L-Threonine (N) N.D. -1.3 +0.1 +0.1 +0.2
nitrogen source Glycine (N) N.D. -1.1 +0.1 +0.0 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.4 -0.4 +0.0 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 -0.5 -0.1 +0.2
nitrogen source Choline chloride (N) N.D. -0.7 +0.1 +0.0 +0.1
nitrogen source Ethanolamine (N) N.D. -0.7 +0.1 +0.0 +0.2
nitrogen source Ethanolamine (N) N.D. -0.8 +0.2 +0.1 +0.2
Atjh15 N.D. -0.3 -0.4 +0.1 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.1 -0.7 -0.1 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 -0.2 +0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 -0.5 +0.1 +0.2
nitrogen source Choline chloride (N) N.D. -0.5 +0.2 +0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 -0.4 +0.1 +0.6
stress Chloramphenicol 12.5 ug/mL N.D. -0.1 -0.3 +0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 -0.3 +0.2 +0.5
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.1 +0.3 +0.2 -0.4
phage AgroPhage_F10 N.D. -0.3 +0.5 +0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 +0.5 +0.2 -0.3
phage AgroPhage_F04 N.D. -0.1 +0.3 +0.2 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.3 +0.5 -0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.1 +0.6 +0.1 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.4 +0.1 +0.1
stress R2A with m-arsenite 0.8 mM N.D. +0.8 -0.1 +0.1 +0.2
stress R2A with m-arsenite 0.8 mM N.D. +0.6 +0.2 +0.0 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.1 +1.4 -0.2 +0.1
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